Table of Contents


Everything

Modules

ansi
arg_check
auto_analyses
auto_analyses.dauvergne_protocol
auto_analyses.noe
auto_analyses.relax_fit
auto_analyses.stereochem_analysis
bmrblib
bmrblib.NMR_parameters
bmrblib.NMR_parameters.chem_shift_anisotropy
bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1
bmrblib.assembly_supercategory
bmrblib.assembly_supercategory.entity
bmrblib.assembly_supercategory.entity_v2_1
bmrblib.assembly_supercategory.entity_v3_1
bmrblib.base_classes
bmrblib.citations
bmrblib.citations.citations
bmrblib.citations.citations_v3_1
bmrblib.entry_information
bmrblib.experimental_details
bmrblib.experimental_details.experiment
bmrblib.experimental_details.experiment_v3_1
bmrblib.experimental_details.method
bmrblib.experimental_details.method_v3_1
bmrblib.experimental_details.nmr_spectrometer
bmrblib.experimental_details.nmr_spectrometer_v3_1
bmrblib.experimental_details.sample_conditions
bmrblib.experimental_details.sample_conditions_v2_1
bmrblib.experimental_details.sample_conditions_v3_1
bmrblib.experimental_details.software
bmrblib.experimental_details.software_v3_1
bmrblib.kinetics
bmrblib.kinetics.auto_relaxation
bmrblib.kinetics.auto_relaxation_v3_1
bmrblib.kinetics.heteronucl_NOEs
bmrblib.kinetics.heteronucl_NOEs_v2_1
bmrblib.kinetics.heteronucl_NOEs_v3_1
bmrblib.kinetics.heteronucl_T1_relaxation
bmrblib.kinetics.heteronucl_T1_relaxation_v2_1
bmrblib.kinetics.heteronucl_T1_relaxation_v3_1
bmrblib.kinetics.heteronucl_T2_relaxation
bmrblib.kinetics.heteronucl_T2_relaxation_v2_1
bmrblib.kinetics.heteronucl_T2_relaxation_v3_1
bmrblib.kinetics.relaxation
bmrblib.misc
bmrblib.nmr_star_dict
bmrblib.nmr_star_dict_v2_1
bmrblib.nmr_star_dict_v3_1
bmrblib.pystarlib
bmrblib.pystarlib.File
bmrblib.pystarlib.FileTest
bmrblib.pystarlib.SaveFrame
bmrblib.pystarlib.SaveFrameTest
bmrblib.pystarlib.TagTable
bmrblib.pystarlib.TagTableTest
bmrblib.pystarlib.Text
bmrblib.pystarlib.TextTest
bmrblib.pystarlib.Utils
bmrblib.pystarlib.UtilsTest
bmrblib.pystarlib.testAll
bmrblib.structure
bmrblib.structure.tensor
bmrblib.thermodynamics
bmrblib.thermodynamics.model_free
bmrblib.thermodynamics.model_free_v3_1
bmrblib.version
colour
data
data.align_tensor
data.data_classes
data.diff_tensor
data.exp_info
data.gui
data.mol_res_spin
data.pipe_container
data.prototype
data.relax_xml
dep_check
docs
docs.latex
docs.latex.fetch_docstrings
float
generic_fns
generic_fns.align_tensor
generic_fns.angles
generic_fns.bmrb
generic_fns.bruker
generic_fns.dasha
generic_fns.diffusion_tensor
generic_fns.eliminate
generic_fns.exp_info
generic_fns.fix
generic_fns.frame_order
generic_fns.frq
generic_fns.grace
generic_fns.minimise
generic_fns.model_selection
generic_fns.mol_res_spin
generic_fns.molmol
generic_fns.monte_carlo
generic_fns.noesy
generic_fns.palmer
generic_fns.paramag
generic_fns.pcs
generic_fns.pipes
generic_fns.pymol_control
generic_fns.rdc
generic_fns.relax_data
generic_fns.relax_re
generic_fns.reset
generic_fns.results
generic_fns.script
generic_fns.selection
generic_fns.sequence
generic_fns.spectrum
generic_fns.state
generic_fns.structure
generic_fns.structure.api_base
generic_fns.structure.cones
generic_fns.structure.geometric
generic_fns.structure.internal
generic_fns.structure.main
generic_fns.structure.mass
generic_fns.structure.scientific
generic_fns.structure.superimpose
generic_fns.sys_info
generic_fns.temperature
generic_fns.value
generic_fns.vmd
generic_fns.xplor
gui
gui.about
gui.analyses
gui.analyses.auto_model_free
gui.analyses.auto_noe
gui.analyses.auto_r1
gui.analyses.auto_r2
gui.analyses.auto_rx_base
gui.analyses.base
gui.analyses.elements
gui.analyses.execute
gui.analyses.results_analysis
gui.analyses.wizard
gui.base_classes
gui.components
gui.components.base_list
gui.components.citations
gui.components.conversion
gui.components.free_file_format
gui.components.grid
gui.components.menu
gui.components.molecule
gui.components.relax_data
gui.components.relax_data_meta
gui.components.software
gui.components.spectrum
gui.controller
gui.errors
gui.export_bmrb
gui.filedialog
gui.fonts
gui.icons
gui.input_elements
gui.input_elements.bool
gui.input_elements.combo_list
gui.input_elements.dir
gui.input_elements.file
gui.input_elements.sequence
gui.input_elements.sequence_2D
gui.input_elements.spin_id
gui.input_elements.value
gui.interpreter
gui.menu
gui.message
gui.misc
gui.paths
gui.pipe_editor
gui.references
gui.relax_gui
gui.relax_prompt
gui.results_viewer
gui.spin_viewer
gui.spin_viewer.containers
gui.spin_viewer.frame
gui.spin_viewer.splitter
gui.spin_viewer.tree
gui.string_conv
gui.uf_objects
gui.wizard
info
maths_fns
maths_fns.alignment_tensor
maths_fns.chi2
maths_fns.consistency_tests
maths_fns.coord_transform
maths_fns.correlation_time
maths_fns.direction_cosine
maths_fns.frame_order
maths_fns.frame_order_matrix_ops
maths_fns.jw_mapping
maths_fns.jw_mf
maths_fns.jw_mf_comps
maths_fns.kronecker_product
maths_fns.mf
maths_fns.n_state_model
maths_fns.order_parameters
maths_fns.paramag_centre
maths_fns.pcs
maths_fns.potential
maths_fns.pseudo_ellipse
maths_fns.rdc
maths_fns.ri
maths_fns.ri_comps
maths_fns.ri_prime
maths_fns.rotation_matrix
maths_fns.weights
minfx
minfx.base_classes
minfx.bfgs
minfx.cauchy_point
minfx.constraint_linear
minfx.coordinate_descent
minfx.dogleg
minfx.errors
minfx.exact_trust_region
minfx.fletcher_reeves_cg
minfx.generic
minfx.grid
minfx.hessian_mods
minfx.hessian_mods.cholesky_mod
minfx.hessian_mods.eigenvalue
minfx.hessian_mods.gmw81
minfx.hessian_mods.gmw81_old
minfx.hessian_mods.se99
minfx.hestenes_stiefel_cg
minfx.levenberg_marquardt
minfx.line_search
minfx.line_search.backtrack
minfx.line_search.interpolate
minfx.line_search.more_thuente
minfx.line_search.nocedal_wright_interpol
minfx.line_search.nocedal_wright_wolfe
minfx.line_search.test_functions
minfx.log_barrier_function
minfx.method_of_multipliers
minfx.ncg
minfx.newton
minfx.polak_ribiere_cg
minfx.polak_ribiere_plus_cg
minfx.simplex
minfx.steepest_descent
minfx.steihaug_cg
multi
multi.memo
multi.misc
multi.mpi4py_processor
multi.multi_processor_base
multi.processor
multi.processor_io
multi.result_commands
multi.result_queue
multi.slave_commands
multi.uni_processor
opendx
opendx.base_map
opendx.isosurface_3D
opendx.main
physical_constants
prompt
prompt.command
prompt.doc_string
prompt.gpl
prompt.help
prompt.interpreter
prompt.tab_completion
prompt.uf_docstring
prompt.uf_objects
relax
relax_errors
relax_io
relax_string
relax_warnings
scons
scons.distrib
scons.install
scons.manuals
script-_sconsign_dblite
script-relax
script-sconstruct
setup
specific_fns
specific_fns.api_base
specific_fns.api_common
specific_fns.api_objects
specific_fns.consistency_tests
specific_fns.frame_order
specific_fns.hybrid
specific_fns.jw_mapping
specific_fns.model_free
specific_fns.model_free.bmrb
specific_fns.model_free.macro_base
specific_fns.model_free.main
specific_fns.model_free.mf_minimise
specific_fns.model_free.molmol
specific_fns.model_free.multi_processor_commands
specific_fns.model_free.pymol
specific_fns.model_free.results
specific_fns.n_state_model
specific_fns.noe
specific_fns.noe.main
specific_fns.relax_fit
specific_fns.setup
status
test_suite
test_suite.formatting
test_suite.gui_tests
test_suite.gui_tests.base_classes
test_suite.gui_tests.bmrb
test_suite.gui_tests.consistency_tests
test_suite.gui_tests.dead_uf_pages
test_suite.gui_tests.frame_order
test_suite.gui_tests.jw_mapping
test_suite.gui_tests.model_free
test_suite.gui_tests.n_state_model
test_suite.gui_tests.noe
test_suite.gui_tests.pipes
test_suite.gui_tests.rx
test_suite.gui_tests.state
test_suite.relax_test_loader
test_suite.relax_test_runner
test_suite.shared_data
test_suite.shared_data.diffusion_tensor
test_suite.shared_data.diffusion_tensor.generate_data
test_suite.system_tests
test_suite.system_tests.align_tensor
test_suite.system_tests.angles
test_suite.system_tests.base_classes
test_suite.system_tests.bmrb
test_suite.system_tests.bruker
test_suite.system_tests.consistency_tests
test_suite.system_tests.dasha
test_suite.system_tests.diffusion_tensor
test_suite.system_tests.frame_order
test_suite.system_tests.generic
test_suite.system_tests.grace
test_suite.system_tests.jw_mapping
test_suite.system_tests.load_spins
test_suite.system_tests.model_elimination
test_suite.system_tests.model_free
test_suite.system_tests.model_selection
test_suite.system_tests.mol_res_spin
test_suite.system_tests.n_state_model
test_suite.system_tests.noe
test_suite.system_tests.noe_restraints
test_suite.system_tests.palmer
test_suite.system_tests.peak_lists
test_suite.system_tests.pipes
test_suite.system_tests.rdc
test_suite.system_tests.relax_data
test_suite.system_tests.relax_fit
test_suite.system_tests.results
test_suite.system_tests.sequence
test_suite.system_tests.state
test_suite.system_tests.structure
test_suite.system_tests.unit_vectors
test_suite.test_suite_runner
test_suite.unit_tests
test_suite.unit_tests._auto_analyses
test_suite.unit_tests._auto_analyses.test___init__
test_suite.unit_tests._data
test_suite.unit_tests._data.test___init__
test_suite.unit_tests._data.test_align_tensor
test_suite.unit_tests._data.test_diff_tensor
test_suite.unit_tests._data.test_mol_res_spin
test_suite.unit_tests._data.test_pipe_container
test_suite.unit_tests._generic_fns
test_suite.unit_tests._generic_fns._structure
test_suite.unit_tests._generic_fns._structure.test___init__
test_suite.unit_tests._generic_fns._structure.test_api_base
test_suite.unit_tests._generic_fns._structure.test_internal
test_suite.unit_tests._generic_fns._structure.test_scientific
test_suite.unit_tests._generic_fns.molecule
test_suite.unit_tests._generic_fns.residue
test_suite.unit_tests._generic_fns.spin
test_suite.unit_tests._generic_fns.test___init__
test_suite.unit_tests._generic_fns.test_align_tensor
test_suite.unit_tests._generic_fns.test_diffusion_tensor
test_suite.unit_tests._generic_fns.test_mol_res_spin
test_suite.unit_tests._generic_fns.test_molecule
test_suite.unit_tests._generic_fns.test_pipes
test_suite.unit_tests._generic_fns.test_relax_data
test_suite.unit_tests._generic_fns.test_relax_re
test_suite.unit_tests._generic_fns.test_residue
test_suite.unit_tests._generic_fns.test_selection
test_suite.unit_tests._generic_fns.test_sequence
test_suite.unit_tests._generic_fns.test_spin
test_suite.unit_tests._generic_fns.test_state
test_suite.unit_tests._generic_fns.test_value
test_suite.unit_tests._maths_fns
test_suite.unit_tests._maths_fns.test___init__
test_suite.unit_tests._maths_fns.test_chi2
test_suite.unit_tests._maths_fns.test_frame_order_matrix_ops
test_suite.unit_tests._maths_fns.test_kronecker_product
test_suite.unit_tests._maths_fns.test_n_state_model
test_suite.unit_tests._maths_fns.test_pseudo_ellipse
test_suite.unit_tests._maths_fns.test_rotation_matrix
test_suite.unit_tests._multi
test_suite.unit_tests._multi.test___init__
test_suite.unit_tests._opendx
test_suite.unit_tests._opendx.test___init__
test_suite.unit_tests._prompt
test_suite.unit_tests._prompt.container
test_suite.unit_tests._prompt.data_types
test_suite.unit_tests._prompt.test___init__
test_suite.unit_tests._prompt.test_align_tensor
test_suite.unit_tests._prompt.test_dasha
test_suite.unit_tests._prompt.test_deselect
test_suite.unit_tests._prompt.test_diffusion_tensor
test_suite.unit_tests._prompt.test_eliminate
test_suite.unit_tests._prompt.test_minimisation
test_suite.unit_tests._prompt.test_model_free
test_suite.unit_tests._prompt.test_molecule
test_suite.unit_tests._prompt.test_molmol
test_suite.unit_tests._prompt.test_n_state_model
test_suite.unit_tests._prompt.test_noe
test_suite.unit_tests._prompt.test_pymol
test_suite.unit_tests._prompt.test_relax_data
test_suite.unit_tests._prompt.test_relax_fit
test_suite.unit_tests._prompt.test_residue
test_suite.unit_tests._prompt.test_select
test_suite.unit_tests._prompt.test_sequence
test_suite.unit_tests._prompt.test_spectrum
test_suite.unit_tests._prompt.test_spin
test_suite.unit_tests._prompt.test_state
test_suite.unit_tests._prompt.test_structure
test_suite.unit_tests._prompt.test_uf_objects
test_suite.unit_tests._prompt.test_value
test_suite.unit_tests._scons
test_suite.unit_tests._specific_fns
test_suite.unit_tests._specific_fns._model_free
test_suite.unit_tests._specific_fns._model_free.test___init__
test_suite.unit_tests._specific_fns._model_free.test_main
test_suite.unit_tests._specific_fns.test___init__
test_suite.unit_tests._specific_fns.test_api
test_suite.unit_tests._specific_fns.test_n_state_model
test_suite.unit_tests._user_functions
test_suite.unit_tests._user_functions.test___init__
test_suite.unit_tests.align_tensor_testing_base
test_suite.unit_tests.base_classes
test_suite.unit_tests.diffusion_tensor_testing_base
test_suite.unit_tests.minimisation_testing_base
test_suite.unit_tests.model_free_testing_base
test_suite.unit_tests.molecule_testing_base
test_suite.unit_tests.n_state_model_testing_base
test_suite.unit_tests.package_checking
test_suite.unit_tests.relax_data_testing_base
test_suite.unit_tests.residue_testing_base
test_suite.unit_tests.sequence_testing_base
test_suite.unit_tests.spin_testing_base
test_suite.unit_tests.state_testing_base
test_suite.unit_tests.structure_testing_base
test_suite.unit_tests.test_float
test_suite.unit_tests.test_relax_io
test_suite.unit_tests.unit_test_runner
test_suite.unit_tests.value_testing_base
user_functions
user_functions.align_tensor'
user_functions.angles'
user_functions.bmrb'
user_functions.bruker'
user_functions.consistency_tests'
user_functions.dasha'
user_functions.data'
user_functions.deselect'
user_functions.diffusion_tensor'
user_functions.dx'
user_functions.eliminate'
user_functions.fix'
user_functions.frame_order'
user_functions.frq'
user_functions.grace'
user_functions.jw_mapping'
user_functions.minimisation'
user_functions.model_free'
user_functions.model_selection'
user_functions.molecule'
user_functions.molmol'
user_functions.monte_carlo'
user_functions.n_state_model'
user_functions.noe'
user_functions.objects'
user_functions.palmer'
user_functions.paramag'
user_functions.pcs'
user_functions.pipe'
user_functions.pymol_control'
user_functions.rdc'
user_functions.relax_data'
user_functions.relax_fit'
user_functions.reset'
user_functions.residue'
user_functions.results'
user_functions.script
user_functions.select
user_functions.sequence
user_functions.spectrum
user_functions.spin
user_functions.state
user_functions.structure
user_functions.sys_info
user_functions.temperature
user_functions.value
user_functions.vmd
version

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