Table of Contents

Everything

Modules

ansi
arg_check
auto_analyses
auto_analyses.dauvergne_protocol
auto_analyses.noe
auto_analyses.relax_fit
auto_analyses.stereochem_analysis
bmrblib

bmrblib.NMR_parameters

bmrblib.NMR_parameters.chem_shift_anisotropy

bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1

bmrblib.assembly_supercategory

bmrblib.assembly_supercategory.entity

bmrblib.assembly_supercategory.entity_v2_1

bmrblib.assembly_supercategory.entity_v3_1

bmrblib.base_classes

bmrblib.citations

bmrblib.citations.citations

bmrblib.citations.citations_v3_1

bmrblib.entry_information

bmrblib.experimental_details

bmrblib.experimental_details.experiment

bmrblib.experimental_details.experiment_v3_1

bmrblib.experimental_details.method

bmrblib.experimental_details.method_v3_1

bmrblib.experimental_details.nmr_spectrometer

bmrblib.experimental_details.nmr_spectrometer_v3_1

bmrblib.experimental_details.sample_conditions

bmrblib.experimental_details.sample_conditions_v2_1

bmrblib.experimental_details.sample_conditions_v3_1

bmrblib.experimental_details.software

bmrblib.experimental_details.software_v3_1

bmrblib.kinetics

bmrblib.kinetics.auto_relaxation

bmrblib.kinetics.auto_relaxation_v3_1

bmrblib.kinetics.heteronucl_NOEs

bmrblib.kinetics.heteronucl_NOEs_v2_1

bmrblib.kinetics.heteronucl_NOEs_v3_1

bmrblib.kinetics.heteronucl_T1_relaxation

bmrblib.kinetics.heteronucl_T1_relaxation_v2_1

bmrblib.kinetics.heteronucl_T1_relaxation_v3_1

bmrblib.kinetics.heteronucl_T2_relaxation

bmrblib.kinetics.heteronucl_T2_relaxation_v2_1

bmrblib.kinetics.heteronucl_T2_relaxation_v3_1

bmrblib.kinetics.relaxation

bmrblib.misc
bmrblib.nmr_star_dict
bmrblib.nmr_star_dict_v2_1
bmrblib.nmr_star_dict_v3_1

bmrblib.pystarlib

bmrblib.pystarlib.File

bmrblib.pystarlib.FileTest

bmrblib.pystarlib.SaveFrame

bmrblib.pystarlib.SaveFrameTest

bmrblib.pystarlib.TagTable

bmrblib.pystarlib.TagTableTest

bmrblib.pystarlib.Text

bmrblib.pystarlib.TextTest

bmrblib.pystarlib.Utils

bmrblib.pystarlib.UtilsTest

bmrblib.pystarlib.testAll

bmrblib.structure

bmrblib.structure.tensor

bmrblib.thermodynamics

bmrblib.thermodynamics.model_free

bmrblib.thermodynamics.model_free_v3_1

bmrblib.version

colour
data
data.align_tensor
data.data_classes
data.diff_tensor
data.exp_info
data.gui
data.mol_res_spin
data.pipe_container
data.prototype
data.relax_xml
dep_check
doc_builder
docs
docs.latex
docs.latex.fetch_docstrings
float
generic_fns
generic_fns.align_tensor
generic_fns.angles
generic_fns.bmrb
generic_fns.bruker
generic_fns.dasha
generic_fns.diffusion_tensor
generic_fns.eliminate
generic_fns.exp_info
generic_fns.fix
generic_fns.frame_order
generic_fns.frq
generic_fns.grace
generic_fns.minimise
generic_fns.model_selection
generic_fns.mol_res_spin
generic_fns.molmol
generic_fns.monte_carlo
generic_fns.noesy
generic_fns.palmer
generic_fns.paramag
generic_fns.pcs
generic_fns.pipes
generic_fns.pymol_control
generic_fns.rdc
generic_fns.relax_data
generic_fns.relax_re
generic_fns.reset
generic_fns.results
generic_fns.selection
generic_fns.sequence
generic_fns.spectrum
generic_fns.state
generic_fns.structure
generic_fns.structure.api_base
generic_fns.structure.cones
generic_fns.structure.geometric
generic_fns.structure.internal
generic_fns.structure.main
generic_fns.structure.mass
generic_fns.structure.scientific
generic_fns.structure.superimpose
generic_fns.sys_info
generic_fns.temperature
generic_fns.value
generic_fns.vmd
generic_fns.xplor
gui
gui.about

gui.analyses.auto_model_free

gui.analyses.auto_noe

gui.analyses.auto_r1

gui.analyses.auto_r2

gui.analyses.auto_rx_base

gui.analyses.base

gui.analyses.elements

gui.analyses.execute

gui.analyses.results_analysis

gui.analyses.wizard

gui.base_classes

gui.components.combo_list

gui.components.conversion

gui.components.grid

gui.components.menu

gui.components.relax_data

gui.components.spectrum

gui.controller
gui.errors
gui.filedialog
gui.fonts
gui.icons
gui.interpreter
gui.menu
gui.message
gui.misc
gui.paths
gui.pipe_editor
gui.references
gui.relax_gui
gui.relax_prompt

gui.results_viewer

gui.spin_viewer

gui.spin_viewer.containers

gui.spin_viewer.frame

gui.spin_viewer.splitter

gui.spin_viewer.tree

gui.user_functions

gui.user_functions.base

gui.user_functions.bmrb

gui.user_functions.bruker

gui.user_functions.deselect

gui.user_functions.gpl

gui.user_functions.grace

gui.user_functions.mol_res_spin

gui.user_functions.molecule

gui.user_functions.molmol

gui.user_functions.noe

gui.user_functions.pipe

gui.user_functions.pymol

gui.user_functions.relax_data

gui.user_functions.relax_fit

gui.user_functions.residue

gui.user_functions.results

gui.user_functions.script

gui.user_functions.select

gui.user_functions.sequence

gui.user_functions.spectrum

gui.user_functions.spin

gui.user_functions.structure

gui.user_functions.sys_info

gui.user_functions.value

gui.wizard_elements

info
maths_fns
maths_fns.alignment_tensor
maths_fns.chi2
maths_fns.consistency_tests
maths_fns.coord_transform
maths_fns.correlation_time
maths_fns.direction_cosine
maths_fns.frame_order
maths_fns.frame_order_matrix_ops
maths_fns.jw_mapping
maths_fns.jw_mf
maths_fns.jw_mf_comps
maths_fns.kronecker_product
maths_fns.mf
maths_fns.n_state_model
maths_fns.order_parameters
maths_fns.paramag_centre
maths_fns.pcs
maths_fns.potential
maths_fns.pseudo_ellipse
maths_fns.rdc
maths_fns.ri
maths_fns.ri_comps
maths_fns.ri_prime
maths_fns.rotation_matrix
maths_fns.weights
minfx
minfx.base_classes
minfx.bfgs
minfx.cauchy_point
minfx.constraint_linear
minfx.coordinate_descent
minfx.dogleg

minfx.exact_trust_region
minfx.fletcher_reeves_cg
minfx.generic
minfx.grid

minfx.hessian_mods

minfx.hessian_mods.cholesky_mod

minfx.hessian_mods.eigenvalue

minfx.hessian_mods.gmw81

minfx.hessian_mods.gmw81_old

minfx.hessian_mods.se99

minfx.hestenes_stiefel_cg
minfx.levenberg_marquardt

minfx.line_search

minfx.line_search.backtrack

minfx.line_search.interpolate

minfx.line_search.more_thuente

minfx.line_search.nocedal_wright_interpol

minfx.line_search.nocedal_wright_wolfe

minfx.line_search.test_functions

minfx.log_barrier_function
minfx.method_of_multipliers
minfx.ncg
minfx.newton
minfx.polak_ribiere_cg
minfx.polak_ribiere_plus_cg
minfx.simplex
minfx.steepest_descent
minfx.steihaug_cg
multi
multi.memo
multi.misc
multi.mpi4py_processor
multi.multi_processor_base
multi.processor
multi.processor_io
multi.result_commands
multi.result_queue
multi.slave_commands
multi.uni_processor
opendx
opendx.base_map
opendx.isosurface_3D
opendx.main
physical_constants
prompt
prompt.align_tensor
prompt.angles
prompt.base_class
prompt.bmrb
prompt.bruker
prompt.command
prompt.consistency_tests
prompt.dasha
prompt.deselect
prompt.diffusion_tensor
prompt.doc_string
prompt.dx
prompt.eliminate
prompt.fix
prompt.frame_order
prompt.frq
prompt.gpl
prompt.grace
prompt.help
prompt.interpreter
prompt.jw_mapping
prompt.minimisation
prompt.model_free
prompt.model_selection
prompt.molecule
prompt.molmol
prompt.monte_carlo
prompt.n_state_model
prompt.noe
prompt.palmer
prompt.paramag
prompt.pcs
prompt.pipe
prompt.pymol_control
prompt.rdc
prompt.relax_data
prompt.relax_fit
prompt.reset
prompt.residue
prompt.results
prompt.select
prompt.sequence
prompt.spectrum
prompt.spin
prompt.state
prompt.structure
prompt.sys_info
prompt.tab_completion
prompt.temperature
prompt.value
prompt.view
prompt.vmd
relax
relax_errors
relax_io
relax_warnings
scons

scons.manuals
script-relax
script-sconstruct
setup
specific_fns
specific_fns.api_base
specific_fns.api_common
specific_fns.api_objects
specific_fns.consistency_tests
specific_fns.frame_order
specific_fns.hybrid
specific_fns.jw_mapping
specific_fns.model_free
specific_fns.model_free.bmrb
specific_fns.model_free.macro_base
specific_fns.model_free.main
specific_fns.model_free.mf_minimise
specific_fns.model_free.molmol
specific_fns.model_free.multi_processor_commands
specific_fns.model_free.pymol
specific_fns.model_free.results
specific_fns.n_state_model
specific_fns.noe
specific_fns.noe.main
specific_fns.relax_fit
specific_fns.setup
status
test_suite
test_suite.formatting

test_suite.gui_tests

test_suite.gui_tests.base_classes

test_suite.gui_tests.bmrb

test_suite.gui_tests.model_free

test_suite.gui_tests.noe

test_suite.gui_tests.rx

test_suite.gui_tests.state

test_suite.relax_test_loader

test_suite.relax_test_runner
test_suite.shared_data
test_suite.shared_data.diffusion_tensor
test_suite.shared_data.diffusion_tensor.generate_data
test_suite.system_tests
test_suite.system_tests.align_tensor
test_suite.system_tests.angles

test_suite.system_tests.base_classes

test_suite.system_tests.bmrb
test_suite.system_tests.bruker
test_suite.system_tests.consistency_tests

test_suite.system_tests.dasha

test_suite.system_tests.diffusion_tensor

test_suite.system_tests.frame_order
test_suite.system_tests.generic
test_suite.system_tests.grace
test_suite.system_tests.jw_mapping
test_suite.system_tests.load_spins
test_suite.system_tests.model_elimination
test_suite.system_tests.model_free
test_suite.system_tests.model_selection
test_suite.system_tests.n_state_model
test_suite.system_tests.noe
test_suite.system_tests.noe_restraints
test_suite.system_tests.palmer

test_suite.system_tests.peak_lists

test_suite.system_tests.pipes

test_suite.system_tests.rdc
test_suite.system_tests.relax_data
test_suite.system_tests.relax_fit
test_suite.system_tests.results
test_suite.system_tests.sequence
test_suite.system_tests.state
test_suite.system_tests.structure
test_suite.system_tests.unit_vectors
test_suite.test_suite_runner
test_suite.unit_tests

test_suite.unit_tests._auto_analyses

test_suite.unit_tests._auto_analyses.test___init__

test_suite.unit_tests._data

test_suite.unit_tests._data.test___init__

test_suite.unit_tests._data.test_align_tensor

test_suite.unit_tests._data.test_diff_tensor

test_suite.unit_tests._data.test_mol_res_spin

test_suite.unit_tests._data.test_pipe_container

test_suite.unit_tests._generic_fns

test_suite.unit_tests._generic_fns._structure

test_suite.unit_tests._generic_fns._structure.test___init__

test_suite.unit_tests._generic_fns._structure.test_api_base

test_suite.unit_tests._generic_fns._structure.test_internal

test_suite.unit_tests._generic_fns._structure.test_scientific

test_suite.unit_tests._generic_fns.molecule

test_suite.unit_tests._generic_fns.residue

test_suite.unit_tests._generic_fns.spin

test_suite.unit_tests._generic_fns.test___init__

test_suite.unit_tests._generic_fns.test_align_tensor

test_suite.unit_tests._generic_fns.test_diffusion_tensor

test_suite.unit_tests._generic_fns.test_mol_res_spin

test_suite.unit_tests._generic_fns.test_molecule

test_suite.unit_tests._generic_fns.test_pipes

test_suite.unit_tests._generic_fns.test_relax_data

test_suite.unit_tests._generic_fns.test_relax_re

test_suite.unit_tests._generic_fns.test_residue

test_suite.unit_tests._generic_fns.test_selection

test_suite.unit_tests._generic_fns.test_sequence

test_suite.unit_tests._generic_fns.test_spin

test_suite.unit_tests._generic_fns.test_state

test_suite.unit_tests._generic_fns.test_value

test_suite.unit_tests._maths_fns

test_suite.unit_tests._maths_fns.test___init__

test_suite.unit_tests._maths_fns.test_chi2

test_suite.unit_tests._maths_fns.test_frame_order_matrix_ops

test_suite.unit_tests._maths_fns.test_kronecker_product

test_suite.unit_tests._maths_fns.test_n_state_model

test_suite.unit_tests._maths_fns.test_pseudo_ellipse

test_suite.unit_tests._maths_fns.test_rotation_matrix

test_suite.unit_tests._multi

test_suite.unit_tests._multi.test___init__

test_suite.unit_tests._opendx

test_suite.unit_tests._opendx.test___init__

test_suite.unit_tests._prompt

test_suite.unit_tests._prompt.data_types

test_suite.unit_tests._prompt.test___init__

test_suite.unit_tests._prompt.test_align_tensor

test_suite.unit_tests._prompt.test_dasha

test_suite.unit_tests._prompt.test_deselect

test_suite.unit_tests._prompt.test_diffusion_tensor

test_suite.unit_tests._prompt.test_eliminate

test_suite.unit_tests._prompt.test_minimisation

test_suite.unit_tests._prompt.test_model_free

test_suite.unit_tests._prompt.test_molecule

test_suite.unit_tests._prompt.test_molmol

test_suite.unit_tests._prompt.test_n_state_model

test_suite.unit_tests._prompt.test_noe

test_suite.unit_tests._prompt.test_pymol

test_suite.unit_tests._prompt.test_relax_data

test_suite.unit_tests._prompt.test_relax_fit

test_suite.unit_tests._prompt.test_residue

test_suite.unit_tests._prompt.test_select

test_suite.unit_tests._prompt.test_sequence

test_suite.unit_tests._prompt.test_spectrum

test_suite.unit_tests._prompt.test_spin

test_suite.unit_tests._prompt.test_state

test_suite.unit_tests._prompt.test_structure

test_suite.unit_tests._prompt.test_value

test_suite.unit_tests._scons

test_suite.unit_tests._specific_fns

test_suite.unit_tests._specific_fns._model_free

test_suite.unit_tests._specific_fns._model_free.test___init__

test_suite.unit_tests._specific_fns._model_free.test_main

test_suite.unit_tests._specific_fns.test___init__

test_suite.unit_tests._specific_fns.test_api

test_suite.unit_tests._specific_fns.test_n_state_model

test_suite.unit_tests.align_tensor_testing_base
test_suite.unit_tests.base_classes
test_suite.unit_tests.diffusion_tensor_testing_base
test_suite.unit_tests.minimisation_testing_base
test_suite.unit_tests.model_free_testing_base
test_suite.unit_tests.molecule_testing_base
test_suite.unit_tests.n_state_model_testing_base
test_suite.unit_tests.package_checking
test_suite.unit_tests.relax_data_testing_base
test_suite.unit_tests.residue_testing_base
test_suite.unit_tests.sequence_testing_base
test_suite.unit_tests.spin_testing_base
test_suite.unit_tests.state_testing_base
test_suite.unit_tests.structure_testing_base
test_suite.unit_tests.test_float
test_suite.unit_tests.test_relax_io
test_suite.unit_tests.unit_test_runner
test_suite.unit_tests.value_testing_base
version