This works
relax_disp_speed -i
relax repository checkout r23372
svn+ssh://svn.gna.org/svn/relax/branches/disp_speed
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2014 the relax development team
This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL). This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty. For details type 'GPL' within
the relax prompt.
Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.
Processor fabric: Uni-processor.
Hardware information:
Machine: x86_64
Processor: i386
Processor name: Intel(R) Core(TM) i5-2435M CPU @ 2.40GHz
Endianness: little
Total RAM size: 2048.0 Mb
Total swap size: 6144.0 Mb
Operating system information:
System: Darwin
Release: 13.1.0
Version: Darwin Kernel Version 13.1.0: Thu Jan 16
19:40:37 PST 2014; root:xnu-2422.90.20~2/RELEASE_X86_64
Mac version: 10.9.2 (, , ) x86_64
Distribution:
Full platform string: Darwin-13.1.0-x86_64-i386-32bit
Python information:
Architecture: 32bit
Python version: 2.7.3
Python branch:
Python build: default, Apr 12 2012 11:28:34
Python compiler: GCC 4.0.1 (Apple Inc. build 5493)
Libc version:
Python implementation: CPython
Python revision:
Python executable:
/Library/Frameworks/Python.framework/Versions/7.3/Resources/Python.app/Contents/MacOS/Python
Python flags: sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0,
bytes_warning=0, hash_randomization=0)
Python float info:
sys.float_info(max=1.7976931348623157e+308, max_exp=1024,
max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16,
radix=2, rounds=1)
Python module path: ['/Users/tlinnet/software/disp_speed',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python27.zip',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-darwin',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-mac',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-mac/lib-scriptpackages',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-tk',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-old',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages',
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/PIL',
'/Library/Python/2.7/site-packages',
'/usr/local/lib/wxPython-2.9.5.0/lib/python2.7']
Python packages and modules (most are optional):
Name Installed Version Path
minfx True 1.0.6
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/minfx
bmrblib True 1.0.3
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/bmrblib
numpy True 1.6.1
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/numpy
scipy True 0.10.1
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/scipy
wxPython True 2.8.10.1 (mac-unicode)
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/wx
matplotlib True 1.1.0
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/matplotlib
mpi4py False
epydoc True 3.0.1
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/epydoc
optparse True 1.5.3
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/optparse.pyc
readline True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload/readline.so
profile True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/profile.pyc
bz2 True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload/bz2.so
gzip True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/gzip.pyc
io True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/io.pyc
xml True 0.8.4 (internal)
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/xml/__init__.pyc
xml.dom.minidom True
/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/xml/dom/minidom.pyc
relax information:
Version: repository checkout r23372
svn+ssh://svn.gna.org/svn/relax/branches/disp_speed
Processor fabric: Uni-processor.
relax C modules:
Module Compiled File type
Path
target_functions.relax_fit True 2-way ['Mach-O 64-bit bundle
x86_64', 'Mach-O bundle i386']
/Users/tlinnet/software/disp_speed/target_functions/relax_fit.so
2014-05-23 10:38 GMT+02:00 Troels Emtekær Linnet <tlinnet@xxxxxxxxxxxxx>:
Hi Ed.
It still does not work:
But
relax> from status import Status; status = Status()
relax> print status.install_path
/Users/tlinnet/software/disp_speed
relax>
tlinnet@linmac:disp_speed$ s=/Users/tlinnet/software/disp_speed
tlinnet@linmac:disp_speed$ cd $s; git svn find-rev $(git rev-parse HEAD)
23372
2014-05-23 9:21 GMT+02:00 Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
Hi,
I just made another simplification for the git-svn version.py support:
r23366: http://article.gmane.org/gmane.science.nmr.relax.scm/21112
Once this issue is resolved, I'll look at releasing relax 3.2.1 with
all the recent bugfixes.
Cheers,
Edward
On 23 May 2014 09:12, Edward d'Auvergne <edward@xxxxxxxxxxxxx> wrote:
Hi Troels,
If that change doesn't work, could you try running:
$ cd %s; git svn find-rev $(git rev-parse HEAD)
where the %s is replaced by the value of status.install_path. This is
the command in the version file for obtaining the subversion revision
number from a git-svn copy. Or:
$ cd %s; git svn info
This is the command used to find the repository URL. These two bits
of information are used for the relax intro text, which used to look
like:
"""
relax repository checkout rNone
None
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2014 the relax development
team
"""
But this new git-svn support:
"""
relax repository checkout r23365
svn+ssh://svn.gna.org/svn/relax/trunk
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2014 the relax development
team
"""
Maybe there is a shell incompatibility with one of these commands, so
make sure you use the 'cd %s; ' part to check that too.
Cheers,
Edward
On 23 May 2014 09:05, Edward d'Auvergne <edward@xxxxxxxxxxxxx> wrote:
Hi,
I first thought that it might have been this test suite printout change:
r23360: http://article.gmane.org/gmane.science.nmr.relax.scm/21105
But now, with that last message, it's clear that it is these two to
the version.py module:
r23345: http://article.gmane.org/gmane.science.nmr.relax.scm/21088
r23343: http://article.gmane.org/gmane.science.nmr.relax.scm/21090
The git-svn support for extracting the repository information I added
mustn't be functioning as I expected. I've attempted a fix at:
r23365: http://article.gmane.org/gmane.science.nmr.relax.scm/21111
Cheers,
Edward
On 22 May 2014 22:58, Troels E. Linnet
<NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
Follow-up Comment #2, bug #22071 (project relax):
If I break, this comes:
File "./relax", line 7, in <module>
relax.start(profile_flag=False)
File "/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/relax.py",
line 118,
in start
processor.run()
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/multi/processor.py",
line 494, in run
self.callback.init_master(self)
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/multi/__init__.py",
line 318, in default_init_master
self.master.run()
File "/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/relax.py",
line 246,
in run
runner.run_unit_tests()
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/test_suite_runner.py",
line 192, in run_unit_tests
self.unit_result = unit_runner.run(runner=self.runner)
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/unit_tests/unit_test_runner.py",
line 624, in run
finder.scan_paths()
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/unit_tests/unit_test_runner.py",
line 378, in scan_paths
test_case = load_test_case(dir_path, module_name, class_name)
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/unit_tests/unit_test_runner.py",
line 316, in load_test_case
return TestLoader().loadTestsFromTestCase(clazz)
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/relax_test_loader.py",
line 56, in loadTestsFromTestCase
test_case = testCaseClass(testCaseNames[i])
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/test_suite/unit_tests/_prompt/test_spectrum.py",
line 43, in __init__
self.interpreter = Interpreter(show_script=False,
raise_relax_error=True)
File
"/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/prompt/interpreter.py",
line
87, in __init__
self.__intro_string = info.intro_text()
File "/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/info.py",
line 287,
in intro_text
text2 = "%s" % (url())
File "/sbinlab2/tlinnet/software/NMR-relax/relax_trunk/version.py",
line
120, in url
if not pipe.stderr.readlines():
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?22071>
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Re: [bug #22071] relax unit test and system test not functional