Hi Troels,
As this is checking the operation of a single function of the lib.io
module, this is really a unit test. It might fit better in the
test_suite/unit_tests/_lib/test_io.py.
Regards,
Edward
On 29 November 2014 at 00:04, <tlinnet@xxxxxxxxxxxxx> wrote:
Author: tlinnet
Date: Sat Nov 29 00:04:35 2014
New Revision: 26815
URL: http://svn.gna.org/viewcvs/relax?rev=26815&view=rev
Log:
Added systemtest Nmrglue.test_get_file_list to test getting a list of
basenames and fileroots.
Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to
nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion:
https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html
Modified:
branches/nmrglue/test_suite/system_tests/nmrglue.py
Modified: branches/nmrglue/test_suite/system_tests/nmrglue.py
URL:
http://svn.gna.org/viewcvs/relax/branches/nmrglue/test_suite/system_tests/nmrglue.py?rev=26815&r1=26814&r2=26815&view=diff
==============================================================================
--- branches/nmrglue/test_suite/system_tests/nmrglue.py (original)
+++ branches/nmrglue/test_suite/system_tests/nmrglue.py Sat Nov 29 00:04:35
2014
@@ -26,7 +26,7 @@
# relax module imports.
from data_store import Relax_data_store; ds = Relax_data_store()
-from lib.io import file_root
+from lib.io import file_root, get_file_list
from pipe_control.nmrglue import plot_contour, plot_hist
from status import Status; status = Status()
from test_suite.system_tests.base_classes import SystemTestCase
@@ -48,6 +48,23 @@
# Create path to nmrglue test data.
ds.ng_test = status.install_path +sep+ 'extern' +sep+ 'nmrglue'
+sep+ 'nmrglue_0_4' +sep+ 'tests' +sep+ 'pipe_proc_tests'
+
+
+ def test_get_file_list(self):
+ """Test getting a file list with glob."""
+
+ # Define base path to files.
+ base_path = status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'repeated_analysis'+sep+'SOD1'
+
+ # Define folder to all ft files.
+ ft2_folder_1 = base_path +sep+ 'cpmg_disp_sod1d90a_060518' +sep+
'cpmg_disp_sod1d90a_060518_normal.fid' +sep+ 'ft2_data'
+
+ # Get the file list matching a glob pattern.
+ ft2_glob_pat = '128_*_FT.ft2'
+ basename_list, file_root_list =
get_file_list(glob_pattern=ft2_glob_pat, dir=ft2_folder_1)
+
+ self.assertEqual(basename_list, ['128_0_FT.ft2', '128_1_FT.ft2'])
+ self.assertEqual(file_root_list, ['128_0_FT', '128_1_FT'])
def test_nmrglue_read(self):
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-commits mailing list
relax-commits@xxxxxxx
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-commits
Re: r26815 - /branches/nmrglue/test_suite/system_tests/nmrglue.py