Hi Troels,
You should here store the outfile as self.tmpfile or ds.tmpfile so
that the base class TearDown method removes the file at the end. You
also will have to remove the delete argument:
[edward@localhost ~]$ python2.5
Python 2.5.6 (r256, Dec 4 2014, 15:01:21)
[GCC 4.8.2] on linux3
Type "help", "copyright", "credits" or "license" for more information.
from tempfile import mkdtemp, NamedTemporaryFile
outfile= NamedTemporaryFile(delete=False).name
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
TypeError: NamedTemporaryFile() got an unexpected keyword argument 'delete'
Cheers,
Edward
On 6 December 2014 at 15:19, <tlinnet@xxxxxxxxxxxxx> wrote:
Author: tlinnet
Date: Sat Dec 6 15:19:46 2014
New Revision: 26977
URL: http://svn.gna.org/viewcvs/relax?rev=26977&view=rev
Log:
Added systemtest Spectrum.test_grace_sn_ratio to help implement plotting
the signaÃl to noise ratio per residue.
Modified:
trunk/test_suite/system_tests/spectrum.py
Modified: trunk/test_suite/system_tests/spectrum.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/spectrum.py?rev=26977&r1=26976&r2=26977&view=diff
==============================================================================
--- trunk/test_suite/system_tests/spectrum.py (original)
+++ trunk/test_suite/system_tests/spectrum.py Sat Dec 6 15:19:46 2014
@@ -194,3 +194,32 @@
# View the plotting.
if show_grace:
self.interpreter.grace.view(file=outfile, dir=filedir,
grace_exe='xmgrace')
+
+
+ def test_grace_sn_ratio(self):
+ """Test grace plotting function for plotting the signal to noise
ratio per residue.
+ """
+
+ # Setup data.
+ self.setup_signal_noise_ratio()
+
+ # Calculate the signal to noise ratio calculation.
+ self.interpreter.spectrum.sn_ratio()
+
+ # Deselect spin with negative intensity.
+ self.interpreter.deselect.spin(spin_id=':4@N', boolean='AND',
change_all=False)
+
+ # Test show grace. If showing, the temporary directory created,
should not be deleted.
+ show_grace = False
+ if show_grace:
+ outfile= NamedTemporaryFile(delete=False).name
+ filedir = dirname(outfile)
+ else:
+ filedir = self.tmpdir
+ outfile = 'int_sn.agr'
+
+ self.interpreter.grace.write(x_data_type='res_num',
y_data_type='sn_ratio', file=outfile, dir=filedir, force=True)
+
+ # View the plotting.
+ if show_grace:
+ self.interpreter.grace.view(file=outfile, dir=filedir,
grace_exe='xmgrace')
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Re: r26977 - /trunk/test_suite/system_tests/spectrum.py