Re: r28088 - in /trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov: 2_load_data_GUI.py temp_state.bz2 -- November 23, 2015 - 12:47

Hi Troels,

If you have a look at this commit message, you'll see a binary diff.
To avoid this, make sure that the svn:mime-type is set to a binary
file type on your binary file type.  For example using:

$ svn propset svn:mime-type application/octet-stream <file_name>

Maybe I should convert the following instructions I wrote and add it
to the relax wiki:  http://wiki.flightgear.org/FGAddon#Binary_diffs .

Cheers,

Edward



On 22 November 2015 at 18:02,  <tlinnet@xxxxxxxxxxxxx> wrote:
> Author: tlinnet
> Date: Sun Nov 22 18:02:15 2015
> New Revision: 28088
>
> URL: http://svn.gna.org/viewcvs/relax?rev=28088&view=rev
> Log:
> Added a temporary state and a script for GUI setup to the data Paul Schanda.
>
> Added:
>     
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/2_load_data_GUI.py
>     
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/temp_state.bz2
>
> Added: 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/2_load_data_GUI.py
> URL: 
> http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/2_load_data_GUI.py?rev=28088&view=auto
> ==============================================================================
> --- 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/2_load_data_GUI.py
>     (added)
> +++ 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/2_load_data_GUI.py
>     Sun Nov 22 18:02:15 2015
> @@ -0,0 +1,70 @@
> +###############################################################################
> +#                                                                          
>    #
> +# Copyright (C) 2015 Troels E. Linnet                                      
>    #
> +#                                                                          
>    #
> +# This file is part of the program relax (http://www.nmr-relax.com).       
>    #
> +#                                                                          
>    #
> +# This program is free software: you can redistribute it and/or modify     
>    #
> +# it under the terms of the GNU General Public License as published by     
>    #
> +# the Free Software Foundation, either version 3 of the License, or        
>    #
> +# (at your option) any later version.                                      
>    #
> +#                                                                          
>    #
> +# This program is distributed in the hope that it will be useful,          
>    #
> +# but WITHOUT ANY WARRANTY; without even the implied warranty of           
>    #
> +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the            
>    #
> +# GNU General Public License for more details.                             
>    #
> +#                                                                          
>    #
> +# You should have received a copy of the GNU General Public License        
>    #
> +# along with this program.  If not, see <http://www.gnu.org/licenses/>.    
>    #
> +#                                                                          
>    #
> +###############################################################################
> +# relax module imports.
> +from status import Status; status = Status()
> +outdir = status.outdir
> +
> +from os import sep
> +
> +# Minimum: Just read the sequence data, but this misses a lot of 
> information.
> +sequence.read(file='residues.txt', res_num_col=1, dir=outdir)
> +
> +# Open the settings file
> +set_file = open(outdir + sep + "exp_settings.txt")
> +set_file_lines = set_file.readlines()
> +
> +for line in set_file_lines:
> +    if "#" in line[0]:
> +        continue
> +
> +    # Get data
> +    field, RF_field_strength_kHz, f_name = line.split()
> +
> +    # Assign data
> +    spec_id = f_name
> +    relax_disp.exp_type(spectrum_id=spec_id, exp_type='R1rho')
> +
> +    # Set the spectrometer frequency
> +    spectrometer.frequency(id=spec_id, frq=float(field), units='MHz')
> +
> +    # Is in kHz, som convert to Hz
> +    #http://wiki.nmr-relax.com/Relax_disp.spin_lock_offset%2Bfield
> +    #http://www.nmr-relax.com/manual/relax_disp_spin_lock_field.html
> +    disp_frq = float(RF_field_strength_kHz)*1000
> +
> +    # Set The spin-lock field strength, nu1, in Hz
> +    relax_disp.spin_lock_field(spectrum_id=spec_id, field=disp_frq)
> +
> +    # Read the R2eff data
> +    relax_disp.r2eff_read(id=spec_id, file=f_name, dir=None, 
> disp_frq=disp_frq, res_num_col=1, data_col=2, error_col=3)
> +
> +    # Is this necessary? The time, in seconds, of the relaxation period.
> +    #relax_disp.relax_time(spectrum_id=spec_id, time=time_sl)
> +
> +
> +# Name the isotope for field strength scaling.
> +spin.isotope(isotope='15N')
> +relax_disp.select_model(model='R2eff')
> +
> +# Plot data
> +relax_disp.plot_disp_curves(dir=outdir + sep + 'grace', y_axis='r2_eff', 
> x_axis='disp', num_points=1000, extend_hz=500.0, extend_ppm=500.0, 
> interpolate='disp', force=True)
> +
> +state.save("temp_state", force=True, dir=outdir)
>
> Added: 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/temp_state.bz2
> URL: 
> http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/temp_state.bz2?rev=28088&view=auto
> ==============================================================================
> --- 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/temp_state.bz2
>         (added)
> +++ 
> trunk/test_suite/shared_data/dispersion/Paul_Schanda_2015_Nov/temp_state.bz2
>         Sun Nov 22 18:02:15 2015
> @@ -0,0 +1,27 @@
> +BZh91AY&SY› ž· -ë €LTD P ÿ÷…ãž
> +¿ÿÿú` ~ Ö{ ö >  =O¾÷^ {vçž»; lpw¬½Þðzqֵ͔»™ÃZ뮆ØÅÔ¹ž1±óhí‰PP 0%4 M šM@
>        ™
> +IM  ê
>      %'êQO(z€     @   i$Є’dÐ 4h4
>  IRA52fžª~„ÈÔÙ'¤z††Aê   Iê  @„ Mé4e2OA3P CM2 @Ú ´v&     yÜ  V”ô¤4R»Õ 
> ˆ¤ùåjEd[VÍf‹5& ²6£  !²m(ÌSÉ— ¥´Íz1'Ã*®X ¨Øm[L²6“j´Ã6Ñl6m±6  Í“(¬´ÙlF¬mK
> +‡¿þÿžiEUQETE UUQ[ ³i²[Km¥l wGßñþW[ ÖŸø\ˆ£å­ Qý(¡k –[ ˜Ÿ“ùPpö ®á SHÿ$QtmX½q 
> _Ö™ù§9?{åè¢í{& )1U€“JèiW pgð>¥  “‹âë¹àùã· Àžþkîø7¸   ‡±„ð
>  ý QUUU  UUUUUUU§Åñ ?ªB ,  ˜n zùÞß LkŒÆ( …q¬&$Ð FVŠŒš¦kQÍ[ ĺa§ [
> +3 2é) %bÍ]a¥¶]XL  ”‹šº5­jK–fY‰[Bö¢@¼/ Ýý|þò
> +󜟋»¦KdÈu  E €DBYeœ ˆ{ ˆˆŠ""""cÌ’""""1»2I~d”F      &d‘ +™$DDDDDDÉ™$ªd‘   
> ùVU¶ÛU€¾8P Ÿ°€È& #ã  n¤ Ô@]ª€x‚ f÷!Yw![W <¹y¹ |& S„ ß{ O  Ê 2ëR ³p R  ÕÀEë$ 
> ãÀfõr
> +·¹  3 ™šD1 Äh0 WºÂ’gd<g ¸ò÷{†F8‰=²uw'Z´ñÍ»¬å9“B‰® ES¡C
> + ­dÎÈá²TZÊzÜ z&Ÿu[šÝ²ÊÌr  t ÚaŽr,e ½6quî.¬VH W,šBc f±Jƒªˆ  ¡;U öé pØ{v  
> ¹‘%u+µ Ðé=‘¼Žƒx ^Ãê±|ë¬  É *…qÁ»Òㆠ…  8 uÁ2¤ ìR¸Ð{¼CÐ¥ ‹ëf
> +Σ4 Ýnn„jîÛ öD‹{›|%§7#»¸íž–*ú§
> Ï  eNÄ
>  9}yÇ .AêXê¦ùq9H)5Ë»B  Uu‰íÙ ¥°ÑÊâx­ Î ] &Á´k :žÌ´‚ qhð {]Í Úͧªå¹WM £Ÿ)ª] 
> sw$ô” OsìW²&œÝ ¼çÒäs¾ U<­7–vC» Qìî™­ u—NÅh ÎÞöÒÛ5@Ö=Þ)…›hv1\Hd 
> Ò§ªú§®¨Ý7t:¤#         "²Ç3“´  ¸‘†F ™¦ÎUÖ©@  N_^ñ| ܖ̵®{¯´]3›ËBJq U€¢Æ9 
> 7Di$ D UQ9ÙoNà s\ï®ùßy«yɬ   ºnhP«hv¢c¶6%‡Iefé8,ã y×G5ëÁ      ð} Ç? UUüƒ 
> &\£UUmLÌUqµ®2L´ Y ° “i™VÓi²¶­¶¶M©JØ`ð=Ãaè6 ¨Üz pèt8  ‘²ÖM‹‰TYî…ÒÖ£I
> ÒŒˆqª´ ‡±™³­ï   ¬  Ö ¼á/$ðNº    ¢v’“±·„Ã0¥XÑ·!ÉfSrJc[yBÐ5
>  ·âùS{¾núõéÝß_vfwwwuMŠœT7(gIÙtk8uõôçXì¾ÍÓZ;¸wU]eî÷rUÛb‚áw¼Jîsµ›§t%­¾ 
> zïs7w7¯X®3Ó›ÔWs£/o;ãø¿ P ˆ wë@  ~ש 4)©sÉÉRj  oú…9yu ¢ ö ]Õ
> +üؤнb>a ¤D`$QJñó²ã×1Wõà¿«ËÊèïßᨠs1   v°C~þb +CÔº´Çªó .Rêy«yËy\Ì97k#Xj F
> +šâô1Ë (Ö `Ì5   |  ¦I     Û[Y°Ã  Y¬Í™¶ 0f³ZÛF | ®¢äAM
> +Í°–ŠŠ&H @¥‹80=vÒvžQu¯9Æ]ª [Mk klÛ0²&êì8f(Ù“uwQ ŠAÝÕ ’‰JNqN TÆðWmÆ"6é1Ó 
> \`(À´Ép ¥/  y ‰|ãc[V1¶eÃmÛTU[©bìKJ®í»JîìË ]§FîQ‘4é bé™°¥\Òš$" Ûr ¦'Oe 
> ˆS‚uS°ŠèÂ'€³ Ps 9A€‚à €<   ‡ Øx
>  ¸Áƒ N[„¥Üj È<AÛ  v¡¾øÑ6 ¿  ÛÐí b…o ’bÄ?#œ8ˆ Dï?‚üÔû¤a$AB;u¾ÙÊ^€ " ¡P ‰Š 
> ˆq¶¢ …+¸ß&XBJÀÍ´X ]Æ     X²ÈË#,YbË,   ŽX¨ “  ¾ó×› · »ëvýÒ³ €Üç‹·Êí«+”ÌÖ¼ 
> ³:´ë©XÂ#)óÛž  .¸Õ,
> Þ{ý ${„%^§B@¢PѺO˜˜
> +l&Ž ’€l»N“Ë Z§  èÏd¬Õ³Â  zê„á×½d* “Ëž;õæóË œ–•ôK Œ} …  °ŠÐ)¬²{%`ÇŸG[5*  rÅ 
> åÚ  é*#9ñléuLTO ì” ‘é å­KÄM¥àh
> uß Éj‘™ Œ (  @ævìØšR@“ ø À3 åqÕlC Ž¯I 2#Žtº— ŸfÕ/5‚M ×° °Æ $*e¡=šÏrU 
> hYÕ-ìL®4NÈ ´†Òꘋå&óxæµß×rÚ5a¶F׊H©œU   ”C–ã »ß/³ Ý
> +}ê½$W ÉÙÚ.~>ž‡G>nyaD _0»˜¢cß{ܯ€„ lÛõM
> + osæU²`@k”в͡z$­`kšWÂ^WÌ 2     ! "‘íËkkhÖÖTò+ðæh‰ˆb¼TUX‚ øXiˆ’ ÝØ wÆõ ˈ 
> {—eÂa8dòžÉé“”
> =÷Þ3€ì˜i
> +Š `  Ö  <o‘Õ)y#9fýf qq Їi     ˆñ ˆ ã‹F˜Ó°Åè im
> mG(“zÆ#8´ ©  óç^k ðX#vGʪ¢¢ê nÛlòÌñðï@&ÛÜ{"v G]áK I vÁ¬«µw °‡A¬ 4 ׶ô€'ZLä  
> ô6X{{V ôt ¯ yñ2 0 Çù`   þ¾ æûóÝT«5˜ÿ Œ{Z} Ó{ Ø—ðº;ÕO¢ Õ
> ðnøô¾Ñ+vëÇâÐFÙèðÑU^D mOŽUü"(qB B  N5ÙjÚÖÖÑ ›!£`|È }NN1;ûÞ ; ÈîûÔ ¶ ˜¬m 
> ÈôëÇ]v zÊla#Ð w 4zqñ8PÌÕ|õ'QšZ Å,Õê·&… [J°‚x £ƒ½qµQ0ã¿
> ÜÕ;Žì‡îs‘êÌ I ‘Ô+Áþ,`få½içÉDЫºåÕÇ}ÔA§8í ÒБñÀN„²'Ç—+ŠlÊ+  ¼Õ×d]ôS¸¶DÎÁ…y 
> ˆ×ƒ  ¡ÆCRèN Æ­¶Ý)–X$  "uìMx¾KϹàD cfvýœA( Š Xã ~Zœó˜se„# Õ£ “Îì  ¤’ ñN‘d‹I 
> ð ›édz¬aÄš:¯9Š¬Á %•;©Úòullé Öûë•9çÕ®
> ÙÙ LÐúª£ ŽºôU  ê; )F:–µúòÏKVd˜½ÂÜí7+Veí­÷Vçp®ˆ ×:EnòŸnÓKÜ|ÄvSâQŽtÊFiš§é$¦Ñc 
> Œõ¾kØ›"O\gEªÒ maž  ;éEUEbkCʪªª¼ =Ð B J03|5Ë-–c®  Ù ÒO²µå”¬t ê³hî3KI ²ªÐ>(p 
> 5 ³Fݼ 3Îöj°Aç}¾KW-uQßÔ` Ž 6ŒÎõ®¹½í úò3­WžÖc32` ‰œŸ&¡ß‡—{O®ÕÝë 9ŸCL  °  KcÍ 
> UHå¢Ü¿6Ëö³R)¬ž »›1Üqâ]†+Ü
> Ðv & ´ZÖÕm¶äͨª¨¢§  È€!Ž837 lãóËèÖy j`¤ ­@Á“v‚à›E2òßkª Ù        -¢êµzš•“" ( 
> xד4™ ›—sœ ²ÖO­ƒOÛ®{½¶ý½œš»•GÜ7&jtîÁñ ©žU†µºŸut/C k¸(ë¬É
> + %;á“nˆ*ŸŽUÁï ;8$ŒÂ=÷ŵµµm·!H&€÷†êûŽ €Í#Hlç “‰¼Lý^¥‘ òé©k ì            
> 2õ(Ý oµ8`š¾ ÇYåõ—âàƒ®^m,Æ Ä!º±ÛÝè`† ˜†ïjtÜ™H‚ RÓŠ*a`åuEëPÓF ¤«m1¹ì«©g¬ 
> mãø ĤÈÓKÌ«‡£e½õ¢§=^}Äæ ¬­-Z6ÚäT@Ã’ ¡¢úÓÇo­2 Þªõç7²ûÙÊj`ë¬Þ kÇßruNu<-> 
> $‘KºîšFq™±Ü`¹h„ ôî)}-+6 ÖÊ;¾àì™­óyÇ7‰0N S›Á  x
> Žï^G€‰œíÌX(]Íx¼±MË âŠÞDùÖ8ùÊÆfo•~b­^o€<
>   E"   ²3·’,  ;¹¾w]÷ÜàÌÒä‘»|·ÚBf o5¥©­s¦¤åŽ' ‡   "        §>9óÆÉâU 
> ©Ã·×4ýtÚS}ù†˜HI’   „n!ž2^ÃkÑÏ6ÉÁ J žhŠž .sô}©é~ ù }á{Ê0bƒîµÒÄO¼‰n{OWnSÕ{|> 
> ø ß_6
>   (€÷{yé‡op 0÷„Êr‹Cy Á†Æ ÆÍ%² DH…ù?J?°< J  H~  ¦OÄ¯ê  Õ¿ ;Ý3ð:ûiÊî@û¤„!c 
> ¶Ö¹z/+ùà÷[Ûƒ#¡H; 9› 4}†Œ„ ~ ïJ;™¦†'¿ë×ëT›–ú^õIø*O‹ö*NŸ­“íw¼ §d 
> °§Z¤êžxSS­ø3îìáªã!² 5 ÕcÛßm™²""*ªªªª¢*ª«ò *ˆ ÄETQˆˆŠªŠ¨Š¨¨¨ŒAˆˆ¨Š¨Äó` ‹ù 
> ^§í!ŒUS“ç  à*'Ê!  ^> …†X2LK# *ÂbÃŒ8/è €õ•r. Î . A#¡ ¤êT (Á 
> ÀvéJwÞ•’jm3£\$¼P°Š ¢Òâ9H¡  ÌD„P‰"""Ý˨¶†æÚ­àR˜¢e×$5pöbŽðÉûË'ânOÀP4 ¡ú·(º 
> ï×°;¯7ûÇSìð|Ϋ£µX>‹—Öý } §u ü ßã`™ ·Œ ,h ¯o}­é®áQ!§9ÜL )u €x áѴܸ}ŸqÅ 
> Cœ¨'¨¡Òy ‹Y<CÓ½Ž ¦Y d Å A Y ð Ð  & 0_ ž·!ÇWgPg€=Òæóž,ºUÒ©<˃jk¹,=ƒ·oŽæè
> +p Ç  Ť¢ªƒ
> + ¬£° ®\¤õv# ì¯ÅÿEDíè$!¤ %IÙ­ïs¼TH g?µ O‚ š×³ø¢ o±Øç
> +}P§ƒü= ³4ßOD)â@z¼>  ©æùÇ[ÂÙòºÇxu*Nþ<ýƒË°¨” ¡,õCÌÈ ‡*u*{y  Wâ—O[Û
> +~XSÑÍRs>¨SÑ +Ðwü‰E ù,Qó )ë£ nB ² ©H
> +y{‚ÃnÖ“Ëú )Üù¬z}w1pàæ( BP  Yx‹q‡Ò_ÌØ<Ê’IëPSÇA Ãw¬(„ TO   a×' : l`  ^Þ¨
> +{2_ O C,l „    ×Î€ì  è=.<ãäqÀÏš ýüžUÌ_À  Ôt d®Ö åî
>  .ý= |P ÚÝÈ
> +\ñ ˆó<Ìäô ù9 R!!E4n¤£àX mýpœZ Ž<  à†öN‹Ôéæ€§å  ‚ Š!í@S~ G!ù G ÌêV€5ênóüz 
> ãºöÁ±‹—$’Kíô  { u‡ îs S¼:€d¤U>“.µwÀ½‹WÏ^ è
> +ziÄ1’“ iC¼ï;ʪò¡Q=x4iœzÈ õÒªáL0ªª¯Ë¨M|2v{‹³ßúã¯iðk d,D5LpøŒ4F  î nàp9.0Ý 
> N’çPÇ = ¸6 \??°Â! X< Çx |fü   Ç·È¿yÆÅ  <t4)Úçàuø·.WÁ û¡MÖŠw/á
> +ol)«ßÙÝ
> +|‡oHyo1O#¸?ñR{Õü×ÇÙî}¾N{ÿ‹¹"œ(HMŒO[€
>
>
> _______________________________________________
> relax (http://www.nmr-relax.com)
>
> This is the relax-commits mailing list
> relax-commits@xxxxxxx
>
> To unsubscribe from this list, get a password
> reminder, or change your subscription options,
> visit the list information page at
> https://mail.gna.org/listinfo/relax-commits