Re: C modules not compiled -- November 14, 2014

Hi.

Try just write scons

But this should only be for the source code.

The packaged versions should already have the compiled C code in it.

So this is weird.

Can you run
relax - d
and post it here?

Best
Troels
On 13 Nov 2014 22:34, "Maciejewski,Mark W." <markm@xxxxxxxx> wrote:

Hello,

I have installed relax 3.2.3 on CentOS release 6.6. The program runs fine
except for the error:
"ImportError: relaxation curve fitting is unavailable, the corresponding C
modules have not been compiled."

I installed relax using the command:
scons install

I have searched the archives and see that others have had similar
problems, but cannot find a solution that works for me.

Any suggestions on how to install or compile the C modules?

Below is the output from "relax -info"

Thanks,
Mark


[nmradmin@nmrbox_wisc ~]$ relax --info



                                            relax 3.2.3

                              Molecular dynamics by NMR data analysis

                             Copyright (C) 2001-2006 Edward d'Auvergne
                         Copyright (C) 2006-2014 the relax development team

This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL).  This program, including all modules, is
licensed under the GPL
and comes with absolutely no warranty.  For details type 'GPL' within the
relax prompt.

Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.

ImportError: relaxation curve fitting is unavailable, the corresponding C
modules have not been compiled.

Processor fabric:  Uni-processor.


Hardware information:
    Machine:                 x86_64
    Processor:               x86_64
    Processor name:          Intel(R) Xeon(R) CPU E5-1620 0 @ 3.60GHz
    Endianness:              little
    Total RAM size:          3832 Mb
    Total swap size:         3967 Mb

Operating system information:
    System:                  Linux
    Release:                 2.6.32-504.1.3.el6.x86_64
    Version:                 #1 SMP Tue Nov 11 17:57:25 UTC 2014
    GNU/Linux version:       CentOS 6.6 Final
    Distribution:            centos 6.6 Final
    Full platform string:
Linux-2.6.32-504.1.3.el6.x86_64-x86_64-with-centos-6.6-Final

Python information:
    Architecture:            64bit ELF
    Python version:          2.6.6
    Python branch:           tags/r266
    Python build:            r266:84292, Jan 22 2014 09:42:36
    Python compiler:         GCC 4.4.7 20120313 (Red Hat 4.4.7-4)
    Libc version:            glibc 2.2.5
    Python implementation:   CPython
    Python revision:         84292
    Python executable:       /usr/bin/python
    Python flags:            sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0,
dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0,
tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0)
    Python float info:       sys.floatinfo(max=1.7976931348623157e+308,
max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.2204460492503131e-16,
radix=2, rounds=1)
    Python module path:      ['/usr/local/relax',
'/usr/lib/python2.6/site-packages/requests-2.4.3-py2.6.egg',
'/usr/lib/python2.6/site-packages/pip-1.5.6-py2.6.egg',
'/usr/lib/python2.6/site-packages/distribute-0.7.3-py2.6.egg',
'/usr/lib/python2.6/site-packages/setuptools-7.0-py2.6.egg',
'/home/nmradmin', '/usr/local/ccpnmr/ccpnmr2.4/python',
'/usr/lib64/python26.zip', '/usr/lib64/python2.6',
'/usr/lib64/python2.6/plat-linux2', '/usr/lib64/python2.6/lib-tk',
'/usr/lib64/python2.6/lib-old', '/usr/lib64/python2.6/lib-dynload',
'/usr/lib64/python2.6/site-packages',
'/usr/lib64/python2.6/site-packages/PIL',
'/usr/lib64/python2.6/site-packages/gst-0.10',
'/usr/lib64/python2.6/site-packages/gtk-2.0',
'/usr/lib64/python2.6/site-packages/webkit-1.0',
'/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode',
'/usr/lib/python2.6/site-packages',
'/usr/lib64/python2.6/site-packages/Scientific/linux2']

Python packages and modules (most are optional):

Name               Installed    Version                    Path
minfx              True         1.0.7
/usr/local/relax/minfx
bmrblib            True         1.0.3
/usr/local/relax/bmrblib
numpy              True         1.9.1
/usr/lib64/python2.6/site-packages/numpy
scipy              True         0.7.2
/usr/lib64/python2.6/site-packages/scipy
wxPython           True         2.8.12.0 (gtk2-unicode)
/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode/wx
matplotlib         True         0.99.1.1
 /usr/lib64/python2.6/site-packages/matplotlib
mpi4py             False
epydoc             True         3.0.1
/usr/lib/python2.6/site-packages/epydoc
optparse           True         1.5.3
/usr/lib64/python2.6/optparse.pyc
readline           True
/usr/lib64/python2.6/lib-dynload/readline.so
profile            True
/usr/lib64/python2.6/profile.pyc
bz2                True
/usr/lib64/python2.6/lib-dynload/bz2.so
gzip               True
/usr/lib64/python2.6/gzip.pyc
io                 True
/usr/lib64/python2.6/io.pyc
xml                True         0.8.4 (internal)
 /usr/lib64/python2.6/xml/__init__.pyc
xml.dom.minidom    True
/usr/lib64/python2.6/xml/dom/minidom.pyc

relax information:
    Version:                 3.2.3
    Processor fabric:        Uni-processor.

relax C modules:

Module                        Compiled    File type    Path
target_functions.relax_fit    False
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Re: C modules not compiled

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