Class Test_scientific

Unit tests for the functions of the 'generic_fns.structure.scientific' module.

Nested Classes

Inherited from unittest.case.TestCase: failureException

Instance Methods

__init__(self, methodName='runTest')
Skip scientific Python tests if not installed.

setUp(self)
Set up for all the Scientific Python PDB structural object unit tests.

tearDown(self)
Reset the relax data storage object.

test___residue_loop(self)
Test the private Scientific_data.__residue_loop() method.

test___residue_loop_selection(self)
Test the private Scientific_data.__residue_loop() method with a selection object.

test___residue_loop_selection_no_match(self)
Test the Scientific_data.__residue_loop() method with a non-matching selection object.

test_atom_loop(self)
Test the Scientific_data.atom_loop() method.

test_atom_loop_mol_selection(self)
Test the Scientific_data.atom_loop() method with the '#XXX' mol selection.

test_atom_loop_res_selection1(self)
Test the Scientific_data.atom_loop() method with the ':8' res selection.

test_atom_loop_res_selection2(self)
Test the Scientific_data.atom_loop() method with the ':PRO' res selection.

test_atom_loop_spin_selection1(self)
Test the Scientific_data.atom_loop() method with the '@CA' spin selection.

test_atom_loop_spin_selection2(self)
Test the Scientific_data.atom_loop() method with the '@163' spin selection.

test_load_pdb(self)
Load a PDB file using Scientific_data.load_pdb().

Inherited from unittest.case.TestCase: __call__, __eq__, __hash__, __ne__, __repr__, __str__, addCleanup, addTypeEqualityFunc, assertAlmostEqual, assertAlmostEquals, assertDictContainsSubset, assertDictEqual, assertEqual, assertEquals, assertFalse, assertGreater, assertGreaterEqual, assertIn, assertIs, assertIsInstance, assertIsNone, assertIsNot, assertIsNotNone, assertItemsEqual, assertLess, assertLessEqual, assertListEqual, assertMultiLineEqual, assertNotAlmostEqual, assertNotAlmostEquals, assertNotEqual, assertNotEquals, assertNotIn, assertNotIsInstance, assertNotRegexpMatches, assertRaises, assertRaisesRegexp, assertRegexpMatches, assertSequenceEqual, assertSetEqual, assertTrue, assertTupleEqual, assert_, countTestCases, debug, defaultTestResult, doCleanups, fail, failIf, failIfAlmostEqual, failIfEqual, failUnless, failUnlessAlmostEqual, failUnlessEqual, failUnlessRaises, id, run, shortDescription, skipTest

Inherited from unittest.case.TestCase (private): _addSkip, _baseAssertEqual, _deprecate, _formatMessage, _getAssertEqualityFunc, _truncateMessage

Inherited from object: __delattr__, __format__, __getattribute__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Methods

Inherited from unittest.case.TestCase: setUpClass, tearDownClass

Class Variables

Inherited from unittest.case.TestCase: longMessage, maxDiff

Inherited from unittest.case.TestCase (private): _classSetupFailed

Properties

Inherited from object: __class__

Method Details

__init__(self, methodName='runTest')
(Constructor)

Skip scientific Python tests if not installed.

Parameters:

• methodName (str) - The name of the test.

Overrides: object.__init__

setUp(self)

Set up for all the Scientific Python PDB structural object unit tests.

Overrides: unittest.case.TestCase.setUp

tearDown(self)

Reset the relax data storage object.

Overrides: unittest.case.TestCase.tearDown