Source Code for Module test_suite.unit_tests._prompt.test_structure

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  3  # Copyright (C) 2007-2008, 2010 Edward d'Auvergne                             # 
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 21  ############################################################################### 
 22   
 23  # Python module imports. 
 24  from unittest import TestCase 
 25   
 26  # relax module imports. 
 27  from prompt.structure import Structure 
 28  from relax_errors import RelaxBoolError, RelaxFloatError, RelaxIntError, RelaxNoneIntError, RelaxNoneIntListIntError, RelaxNoneStrError, RelaxNoneStrListStrError, RelaxNumError, RelaxStrError 
 29  from test_suite.unit_tests.structure_testing_base import Structure_base_class 
 30   
 31  # Unit test imports. 
 32  from data_types import DATA_TYPES 
 33   
 34   
 35 -class Test_structure(Structure_base_class, TestCase): 
 36      """Unit tests for the functions of the 'prompt.structure' module.""" 
 37   
 38      # Instantiate the user function class. 
 39      structure_fns = Structure() 
 40   
 41   
 42 -    def test_create_diff_tensor_pdb_argfail_scale(self): 
 43          """The scale arg test of the structure.create_diff_tensor_pdb() user function.""" 
 44   
 45          # Loop over the data types. 
 46          for data in DATA_TYPES: 
 47              # Catch the float, bin, and int arguments, and skip them. 
 48              if data[0] == 'float' or data[0] == 'bin' or data[0] == 'int': 
 49                  continue 
 50   
 51              # The argument test. 
 52              self.assertRaises(RelaxNumError, self.structure_fns.create_diff_tensor_pdb, scale=data[1]) 
 53   
 54   
 55 -    def test_create_diff_tensor_pdb_argfail_file(self): 
 56          """The file arg test of the structure.create_diff_tensor_pdb() user function.""" 
 57   
 58          # Loop over the data types. 
 59          for data in DATA_TYPES: 
 60              # Catch the str arguments, and skip them. 
 61              if data[0] == 'str': 
 62                  continue 
 63   
 64              # The argument test. 
 65              self.assertRaises(RelaxStrError, self.structure_fns.create_diff_tensor_pdb, file=data[1]) 
 66   
 67   
 68 -    def test_create_diff_tensor_pdb_argfail_dir(self): 
 69          """The dir arg test of the structure.create_diff_tensor_pdb() user function.""" 
 70   
 71          # Loop over the data types. 
 72          for data in DATA_TYPES: 
 73              # Catch the None and str arguments, and skip them. 
 74              if data[0] == 'None' or data[0] == 'str': 
 75                  continue 
 76   
 77              # The argument test. 
 78              self.assertRaises(RelaxNoneStrError, self.structure_fns.create_diff_tensor_pdb, dir=data[1]) 
 79   
 80   
 81 -    def test_create_diff_tensor_pdb_argfail_force(self): 
 82          """The force arg test of the structure.create_diff_tensor_pdb() user function.""" 
 83   
 84          # Loop over the data types. 
 85          for data in DATA_TYPES: 
 86              # Catch the bool arguments, and skip them. 
 87              if data[0] == 'bool': 
 88                  continue 
 89   
 90              # The argument test. 
 91              self.assertRaises(RelaxBoolError, self.structure_fns.create_diff_tensor_pdb, force=data[1]) 
 92   
 93   
 94 -    def test_create_vector_dist_argfail_length(self): 
 95          """The length arg test of the structure.create_vector_dist() user function.""" 
 96   
 97          # Loop over the data types. 
 98          for data in DATA_TYPES: 
 99              # Catch the number arguments, and skip them. 
100              if data[0] == 'bin' or data[0] == 'int' or data[0] == 'float': 
101                  continue 
102   
103              # The argument test. 
104              self.assertRaises(RelaxNumError, self.structure_fns.create_vector_dist, length=data[1]) 
105   
106   
107 -    def test_create_vector_dist_argfail_file(self): 
108          """The file arg test of the structure.create_vector_dist() user function.""" 
109   
110          # Loop over the data types. 
111          for data in DATA_TYPES: 
112              # Catch the str arguments, and skip them. 
113              if data[0] == 'str': 
114                  continue 
115   
116              # The argument test. 
117              self.assertRaises(RelaxStrError, self.structure_fns.create_vector_dist, file=data[1]) 
118   
119   
120 -    def test_create_vector_dist_argfail_dir(self): 
121          """The dir arg test of the structure.create_vector_dist() user function.""" 
122   
123          # Loop over the data types. 
124          for data in DATA_TYPES: 
125              # Catch the None and str arguments, and skip them. 
126              if data[0] == 'None' or data[0] == 'str': 
127                  continue 
128   
129              # The argument test. 
130              self.assertRaises(RelaxNoneStrError, self.structure_fns.create_vector_dist, dir=data[1]) 
131   
132   
133 -    def test_create_vector_dist_argfail_symmetry(self): 
134          """The symmetry arg test of the structure.create_vector_dist() user function.""" 
135   
136          # Loop over the data types. 
137          for data in DATA_TYPES: 
138              # Catch the bool arguments, and skip them. 
139              if data[0] == 'bool': 
140                  continue 
141   
142              # The argument test. 
143              self.assertRaises(RelaxBoolError, self.structure_fns.create_vector_dist, symmetry=data[1]) 
144   
145   
146 -    def test_create_vector_dist_argfail_force(self): 
147          """The force arg test of the structure.create_vector_dist() user function.""" 
148   
149          # Loop over the data types. 
150          for data in DATA_TYPES: 
151              # Catch the bool arguments, and skip them. 
152              if data[0] == 'bool': 
153                  continue 
154   
155              # The argument test. 
156              self.assertRaises(RelaxBoolError, self.structure_fns.create_vector_dist, force=data[1]) 
157   
158   
159 -    def test_load_spins_argfail_spin_id(self): 
160          """The spin_id arg test of the structure.load_spins() user function.""" 
161   
162          # Loop over the data types. 
163          for data in DATA_TYPES: 
164              # Catch the None and str arguments, and skip them. 
165              if data[0] == 'None' or data[0] == 'str': 
166                  continue 
167   
168              # The argument test. 
169              self.assertRaises(RelaxNoneStrError, self.structure_fns.load_spins, spin_id=data[1]) 
170   
171   
172 -    def test_read_pdb_argfail_file(self): 
173          """The file arg test of the structure.read_pdb() user function.""" 
174   
175          # Loop over the data types. 
176          for data in DATA_TYPES: 
177              # Catch the str arguments, and skip them. 
178              if data[0] == 'str': 
179                  continue 
180   
181              # The argument test. 
182              self.assertRaises(RelaxStrError, self.structure_fns.read_pdb, file=data[1]) 
183   
184   
185 -    def test_read_pdb_argfail_dir(self): 
186          """The dir arg test of the structure.read_pdb() user function.""" 
187   
188          # Loop over the data types. 
189          for data in DATA_TYPES: 
190              # Catch the None and str arguments, and skip them. 
191              if data[0] == 'None' or data[0] == 'str': 
192                  continue 
193   
194              # The argument test. 
195              self.assertRaises(RelaxNoneStrError, self.structure_fns.read_pdb, file='test.pdb', dir=data[1]) 
196   
197   
198 -    def test_read_pdb_argfail_read_mol(self): 
199          """The read_mol arg test of the structure.read_pdb() user function.""" 
200   
201          # Loop over the data types. 
202          for data in DATA_TYPES: 
203              # Catch the None, bin, int, and int list arguments, and skip them. 
204              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
205                  continue 
206   
207              # The argument test. 
208              self.assertRaises(RelaxNoneIntListIntError, self.structure_fns.read_pdb, file='test.pdb', read_mol=data[1]) 
209   
210   
211 -    def test_read_pdb_argfail_set_mol_name(self): 
212          """The set_mol_name arg test of the structure.read_pdb() user function.""" 
213   
214          # Loop over the data types. 
215          for data in DATA_TYPES: 
216              # Catch the None, str, and str list arguments, and skip them. 
217              if data[0] == 'None' or data[0] == 'str' or data[0] == 'str list': 
218                  continue 
219   
220              # The argument test. 
221              self.assertRaises(RelaxNoneStrListStrError, self.structure_fns.read_pdb, file='test.pdb', set_mol_name=data[1]) 
222   
223   
224 -    def test_read_pdb_argfail_read_model(self): 
225          """The read_model arg test of the structure.read_pdb() user function.""" 
226   
227          # Loop over the data types. 
228          for data in DATA_TYPES: 
229              # Catch the None, bin, int, and int list arguments, and skip them. 
230              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
231                  continue 
232   
233              # The argument test. 
234              self.assertRaises(RelaxNoneIntListIntError, self.structure_fns.read_pdb, file='test.pdb', read_model=data[1]) 
235   
236   
237 -    def test_read_pdb_argfail_set_model_num(self): 
238          """The set_model_num arg test of the structure.read_pdb() user function.""" 
239   
240          # Loop over the data types. 
241          for data in DATA_TYPES: 
242              # Catch the None, bin, int, and int list arguments, and skip them. 
243              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
244                  continue 
245   
246              # The argument test. 
247              self.assertRaises(RelaxNoneIntListIntError, self.structure_fns.read_pdb, file='test.pdb', set_model_num=data[1]) 
248   
249   
250 -    def test_read_pdb_argfail_parser(self): 
251          """The parser arg test of the structure.read_pdb() user function.""" 
252   
253          # Loop over the data types. 
254          for data in DATA_TYPES: 
255              # Catch the str arguments, and skip them. 
256              if data[0] == 'str': 
257                  continue 
258   
259              # The argument test. 
260              self.assertRaises(RelaxStrError, self.structure_fns.read_pdb, parser=data[1]) 
261   
262   
263 -    def test_vectors_argfail_attached(self): 
264          """The attached arg test of the structure.vectors() user function.""" 
265   
266          # Loop over the data types. 
267          for data in DATA_TYPES: 
268              # Catch the str arguments, and skip them. 
269              if data[0] == 'str': 
270                  continue 
271   
272              # The argument test. 
273              self.assertRaises(RelaxStrError, self.structure_fns.vectors, attached=data[1]) 
274   
275   
276 -    def test_vectors_argfail_spin_id(self): 
277          """The spin_id arg test of the structure.vectors() user function.""" 
278   
279          # Loop over the data types. 
280          for data in DATA_TYPES: 
281              # Catch the None and str arguments, and skip them. 
282              if data[0] == 'None' or data[0] == 'str': 
283                  continue 
284   
285              # The argument test. 
286              self.assertRaises(RelaxNoneStrError, self.structure_fns.vectors, spin_id=data[1]) 
287   
288   
289 -    def test_vectors_argfail_model(self): 
290          """The model arg test of the structure.vectors() user function.""" 
291   
292          # Loop over the data types. 
293          for data in DATA_TYPES: 
294              # Catch the None, bin, and int arguments, and skip them. 
295              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int': 
296                  continue 
297   
298              # The argument test. 
299              self.assertRaises(RelaxNoneIntError, self.structure_fns.vectors, model=data[1]) 
300   
301   
302 -    def test_vectors_argfail_verbosity(self): 
303          """The verbosity arg test of the structure.vectors() user function.""" 
304   
305          # Loop over the data types. 
306          for data in DATA_TYPES: 
307              # Catch the bin and int arguments, and skip them. 
308              if data[0] == 'bin' or data[0] == 'int': 
309                  continue 
310   
311              # The argument test. 
312              self.assertRaises(RelaxIntError, self.structure_fns.vectors, verbosity=data[1]) 
313   
314   
315 -    def test_vectors_argfail_ave(self): 
316          """The ave arg test of the structure.vectors() user function.""" 
317   
318          # Loop over the data types. 
319          for data in DATA_TYPES: 
320              # Catch the bool arguments, and skip them. 
321              if data[0] == 'bool': 
322                  continue 
323   
324              # The argument test. 
325              self.assertRaises(RelaxBoolError, self.structure_fns.vectors, ave=data[1]) 
326   
327   
328 -    def test_vectors_argfail_unit(self): 
329          """The unit arg test of the structure.vectors() user function.""" 
330   
331          # Loop over the data types. 
332          for data in DATA_TYPES: 
333              # Catch the bool arguments, and skip them. 
334              if data[0] == 'bool': 
335                  continue 
336   
337              # The argument test. 
338              self.assertRaises(RelaxBoolError, self.structure_fns.vectors, unit=data[1]) 
339