Source Code for Module test_suite.unit_tests._specific_fns._model_free.test_main

  1  ############################################################################### 
  2  #                                                                             # 
  3  # Copyright (C) 2008-2011 Edward d'Auvergne                                   # 
  4  #                                                                             # 
  5  # This file is part of the program relax.                                     # 
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 11  #                                                                             # 
 12  # relax is distributed in the hope that it will be useful,                    # 
 13  # but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
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 15  # GNU General Public License for more details.                                # 
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 19  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA   # 
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 21  ############################################################################### 
 22   
 23  # Python module imports. 
 24  from os import sep 
 25  import sys 
 26   
 27  # relax module imports. 
 28  from data import Relax_data_store; ds = Relax_data_store() 
 29  from generic_fns import pipes, results, structure 
 30  from relax_errors import RelaxError 
 31  from specific_fns.model_free import main 
 32  from status import Status; status = Status() 
 33  from test_suite.unit_tests.base_classes import UnitTestCase 
 34   
 35   
 36 -class Test_main(UnitTestCase): 
 37      """Unit tests for the class methods of specific_fns.model_free.main.Model_free_main.""" 
 38   
 39      # Instantiate the class. 
 40      inst = main.Model_free_main() 
 41   
 42   
 43 -    def setUp(self): 
 44          """Setup some structures for the unit tests.""" 
 45   
 46          # Create a model-free data pipe. 
 47          ds.add(pipe_name='orig', pipe_type='mf') 
 48   
 49   
 50 -    def test_duplicate_data1(self): 
 51          """Test the model-free duplicate_data() method.""" 
 52   
 53          # Duplicate the data. 
 54          self.inst.duplicate_data('orig', 'new', model_info=0) 
 55   
 56   
 57 -    def test_duplicate_data2(self): 
 58          """Test the model-free duplicate_data() method.""" 
 59   
 60          # Read a model-free results file. 
 61          results.read(file='final_results_trunc_1.3', directory=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 62   
 63          # Duplicate the data. 
 64          self.inst.duplicate_data('orig', 'new', model_info=0) 
 65   
 66   
 67 -    def test_duplicate_data3(self): 
 68          """Test the model-free duplicate_data() method.""" 
 69   
 70          # Read a model-free results file. 
 71          results.read(file='final_results_trunc_1.3', directory=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 72   
 73          # Load a structure. 
 74          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
 75   
 76          # Duplicate the data. 
 77          self.inst.duplicate_data('orig', 'new', model_info=0) 
 78   
 79          # Check the original data. 
 80          self.assert_(hasattr(pipes.get_pipe('orig'), 'structure')) 
 81   
 82          # Check the duplication. 
 83          self.assert_(hasattr(pipes.get_pipe('new'), 'structure')) 
 84   
 85   
 86 -    def test_duplicate_data_single_mf_model(self): 
 87          """Test the model-free duplicate_data() method.""" 
 88   
 89          # Read a model-free results file. 
 90          results.read(file='final_results_trunc_1.3', directory=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 91   
 92          # Load a structure. 
 93          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
 94   
 95          # Duplicate the data, model by model. 
 96          self.inst.duplicate_data('orig', 'new', model_info=0) 
 97          self.inst.duplicate_data('orig', 'new', model_info=1) 
 98          self.inst.duplicate_data('orig', 'new', model_info=2) 
 99          self.inst.duplicate_data('orig', 'new', model_info=3) 
100   
101   
102 -    def test_duplicate_data_fail1(self): 
103          """Test the failure of the model-free duplicate_data() method when the structures are not consistent.""" 
104   
105          # Read a model-free results file. 
106          results.read(file='final_results_trunc_1.3', directory=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
107   
108          # Load a structure. 
109          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
110   
111          # Create a new model-free data pipe. 
112          ds.add(pipe_name='new', pipe_type='mf') 
113   
114          # Load the structure for the second pipe. 
115          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
116   
117          # Modify the structure. 
118          dp = pipes.get_pipe('new') 
119          dp.structure.structural_data[0].mol[0].file_name = 'test' 
120   
121          # Duplicate the data and catch the error. 
122          self.assertRaises(RelaxError, self.inst.duplicate_data, 'orig', 'new', model_info=0) 
123