Class Macro

The base class for the model-free analysis Molmol and PyMOL macro creation.

Instance Methods

classic_style(self, data_type=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)
The classic macro style.

classic_correlation_time(self, res_num, te, colour_start, colour_end, colour_list)
Function for generating the bond width and colours for correlation times.

classic_order_param(self, res_num, s2, colour_start, colour_end, colour_list)
Function for generating the bond width and colours for order parameters.

classic_rex(self, res_num, rex, colour_start, colour_end, colour_list)
Function for generating the bond width and colours for correlation times.

create_macro(self, data_type, style=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)
Create and return an array of macros of the model-free parameters.

Class Variables

classic_style_doc = Desc_container("Model-free classic style")

table = uf_tables.add_table(label= "table: model-free macro cl...

Method Details

classic_style(self, data_type=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)

The classic macro style.

Parameters:

• data_type (str) - The parameter name or data type.
• colour_start (str) - The starting colour (must be a MOLMOL or X11 name).
• colour_end (str) - The ending colour (must be a MOLMOL or X11 name).
• colour_list (str) - The colour list used, either 'molmol' or 'x11'.
• spin_id (str) - The spin identification string.

create_macro(self, data_type, style=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)

Create and return an array of macros of the model-free parameters.

Parameters:

• data_type (str) - The parameter name or data type.
• style (None or str) - The Molmol style.
• colour_start (str) - The starting colour (must be a MOLMOL or X11 name).
• colour_end (str) - The ending colour (must be a MOLMOL or X11 name).
• colour_list (str) - The colour list used, either 'molmol' or 'x11'.
• spin_id (str) - The spin identification string.

Class Variable Details

table

Value:

uf_tables.add_table(label= "table: model-free macro classic style", ca
ption= "The model-free classic style for mapping model spin specific d
ata onto 3D molecular structures using either PyMOL or Molmol.", capti
on_short= "The model-free classic style for PyMOL and Molmol data mapp
ing.")