Source Code for Module test_suite.system_tests.model_elimination

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 2  #                                                                             # 
 3  # Copyright (C) 2006-2012 Edward d'Auvergne                                   # 
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22   
23  # Python module imports. 
24  from os import sep 
25   
26  # relax module imports. 
27  from base_classes import SystemTestCase 
28  from data import Relax_data_store; ds = Relax_data_store() 
29  from generic_fns.mol_res_spin import return_spin 
30  from status import Status; status = Status() 
31   
32   
33 -class Modelim(SystemTestCase): 
34      """Class for testing model selection.""" 
35   
36 -    def setUp(self): 
37          """Set up for these system tests.""" 
38   
39          # Create a model-free data pipe. 
40          self.interpreter.pipe.create('elim', 'mf') 
41   
42   
43 -    def test_te_200ns(self): 
44          """Test the elimination of a model-free model with te = 200 ns.""" 
45   
46          # Read a results file. 
47          self.interpreter.results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
48   
49          # Set the te value for residue 11 Leu to 200 ns. 
50          self.interpreter.value.set(200*1e-9, 'te', spin_id=":11") 
51   
52          # Model elimination. 
53          self.interpreter.eliminate() 
54   
55          # Checks. 
56          self.assert_(return_spin(':9').select) 
57          self.assert_(return_spin(':10').select) 
58          self.assert_(not return_spin(':11').select) 
59          self.assert_(return_spin(':12').select) 
60   
61   
62 -    def test_tm_51ns(self): 
63          """Test the elimination of a model-free model with the local tm = 51 ns.""" 
64   
65          # Execute the script. 
66          self.script_exec(status.install_path + sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'local_tm_model_elimination.py') 
67   
68          # Checks. 
69          self.assert_(return_spin(':13').select) 
70          self.assert_(return_spin(':14').select) 
71          self.assert_(not return_spin(':15').select) 
72          self.assert_(return_spin(':16').select) 
73