Package test_suite :: Package unit_tests :: Module sequence_testing_base :: Class Sequence_base_class
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Class Sequence_base_class

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Base class for the tests of both the 'prompt.sequence' and 'generic_fns.sequence' modules.

This base class also contains many shared unit tests.

Nested Classes [hide private]

Inherited from unittest.case.TestCase: failureException

Instance Methods [hide private]
 
setUp(self)
Set up for all the molecule unit tests.
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test_copy_protein_sequence(self)
Test the copying of an amino acid sequence.
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test_display_protein_sequence(self)
Test the display of an amino acid sequence.
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test_read_protein_noe_data(self)
Test the reading of the amino acid sequence out of a protein NOE data file.
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test_write_protein_sequence(self)
Test the writing of an amino acid sequence.
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Inherited from base_classes.UnitTestCase: tearDown

Inherited from unittest.case.TestCase: __call__, __eq__, __hash__, __init__, __ne__, __repr__, __str__, addCleanup, addTypeEqualityFunc, assertAlmostEqual, assertAlmostEquals, assertDictContainsSubset, assertDictEqual, assertEqual, assertEquals, assertFalse, assertGreater, assertGreaterEqual, assertIn, assertIs, assertIsInstance, assertIsNone, assertIsNot, assertIsNotNone, assertItemsEqual, assertLess, assertLessEqual, assertListEqual, assertMultiLineEqual, assertNotAlmostEqual, assertNotAlmostEquals, assertNotEqual, assertNotEquals, assertNotIn, assertNotIsInstance, assertNotRegexpMatches, assertRaises, assertRaisesRegexp, assertRegexpMatches, assertSequenceEqual, assertSetEqual, assertTrue, assertTupleEqual, assert_, countTestCases, debug, defaultTestResult, doCleanups, fail, failIf, failIfAlmostEqual, failIfEqual, failUnless, failUnlessAlmostEqual, failUnlessEqual, failUnlessRaises, id, run, shortDescription, skipTest

Inherited from unittest.case.TestCase (private): _addSkip, _baseAssertEqual, _deprecate, _formatMessage, _getAssertEqualityFunc, _truncateMessage

Inherited from object: __delattr__, __format__, __getattribute__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Methods [hide private]

Inherited from unittest.case.TestCase: setUpClass, tearDownClass

Class Variables [hide private]

Inherited from unittest.case.TestCase: longMessage, maxDiff

Inherited from unittest.case.TestCase (private): _classSetupFailed

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

setUp(self)

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Set up for all the molecule unit tests.

Overrides: unittest.case.TestCase.setUp

test_copy_protein_sequence(self)

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Test the copying of an amino acid sequence.

The functions tested are generic_fns.sequence.copy() and prompt.sequence.copy().

test_display_protein_sequence(self)

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Test the display of an amino acid sequence.

The functions tested are generic_fns.sequence.display() and prompt.sequence.display().

test_read_protein_noe_data(self)

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Test the reading of the amino acid sequence out of a protein NOE data file.

The functions tested are generic_fns.sequence.read() and prompt.sequence.read().

test_write_protein_sequence(self)

source code 

Test the writing of an amino acid sequence.

The functions tested are generic_fns.sequence.write() and prompt.sequence.write().