Source Code for Module user_functions.consistency_tests'

 1  ############################################################################### 
 2  #                                                                             # 
 3  # Copyright (C) 2004-2012 Edward d'Auvergne                                   # 
 4  # Copyright (C) 2007-2008 Sebastien Morin                                     # 
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 6  # This file is part of the program relax.                                     # 
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22  ############################################################################### 
23   
24  # Module docstring. 
25  """The consistency_tests user function definitions.""" 
26   
27  # relax module imports. 
28  from generic_fns import frq 
29  from graphics import ANALYSIS_IMAGE_PATH 
30  from specific_fns.setup import consistency_tests_obj 
31  from user_functions.data import Uf_info; uf_info = Uf_info() 
32  from user_functions.objects import Desc_container 
33   
34   
35  # The user function class. 
36  uf_class = uf_info.add_class('consistency_tests') 
37  uf_class.title = "Class containing functions specific to consistency tests for datasets from different fields." 
38  uf_class.menu_text = "&consistency_tests" 
39  uf_class.gui_icon = "relax.consistency_testing" 
40   
41   
42  # The consistency_tests.set_frq user function. 
43  uf = uf_info.add_uf('consistency_tests.set_frq') 
44  uf.title = "Select which relaxation data to use in the consistency tests by NMR spectrometer frequency." 
45  uf.title_short = "Spectrometer selection." 
46  uf.add_keyarg( 
47      name = "frq", 
48      py_type = "float", 
49      desc_short = "spectrometer frequency in Hz", 
50      desc = "The spectrometer frequency in Hz.  This must match the currently loaded data to the last decimal point.  See the 'sfrq' parameter in the Varian procpar file or the 'SFO1' parameter in the Bruker acqus file.", 
51      wiz_element_type = 'combo', 
52      wiz_combo_iter = frq.get_values, 
53      wiz_read_only = True, 
54  ) 
55  # Description. 
56  uf.desc.append(Desc_container()) 
57  uf.desc[-1].add_paragraph("This will select the relaxation data to use in the consistency tests corresponding to the given frequencies.  The data is selected by the spectrometer frequency in Hertz, which should be set to the exact value (see the 'sfrq' parameter in the Varian procpar file or the 'SFO1' parameter in the Bruker acqus file).  Note thought that the R1, R2 and NOE are all expected to have the exact same frequency in the J(w) mapping analysis (to the last decimal point).") 
58  # Prompt examples. 
59  uf.desc.append(Desc_container("Prompt examples")) 
60  uf.desc[-1].add_prompt("relax> consistency_tests.set_frq(600.0 * 1e6)") 
61  uf.desc[-1].add_prompt("relax> consistency_tests.set_frq(frq=600.0 * 1e6)") 
62  uf.backend = consistency_tests_obj._set_frq 
63  uf.menu_text = "&set_frq" 
64  uf.gui_icon = "relax.frq" 
65  uf.wizard_height_desc = 350 
66  uf.wizard_size = (700, 500) 
67  uf.wizard_image = ANALYSIS_IMAGE_PATH + 'consistency_testing_200x94.png' 
68