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24 """The model_selection user function definitions."""
25
26
27 from generic_fns import model_selection, pipes
28 from graphics import WIZARD_IMAGE_PATH
29 from user_functions.data import Uf_info; uf_info = Uf_info()
30 from user_functions.objects import Desc_container
31
32
33
34 uf = uf_info.add_uf('model_selection')
35 uf.title = "Select the best model from a set of optimised models."
36 uf.title_short = "Model selection."
37 uf.display = True
38 uf.add_keyarg(
39 name = "method",
40 default = "AIC",
41 py_type = "str",
42 desc_short = "model selection method",
43 desc = "The model selection technique (see below).",
44 wiz_element_type = 'combo',
45 wiz_combo_choices = [
46 "Akaike's Information Criteria",
47 "Small sample size corrected AIC",
48 "Bayesian or Schwarz Information Criteria",
49 "Bootstrap model selection",
50 "Single-item-out cross-validation",
51 "Expected overall discrepancy",
52 "Farrow et al., 1994",
53 "Mandel et al., 1995",
54 "Realised overall discrepancy"
55 ],
56 wiz_combo_data = [
57 "AIC",
58 "AICc",
59 "BIC",
60 "Bootstrap",
61 "CV",
62 "Expect",
63 "Farrow",
64 "Palmer",
65 "Overall"
66 ],
67 wiz_read_only = True
68 )
69 uf.add_keyarg(
70 name = "modsel_pipe",
71 py_type = "str",
72 desc_short = "model selection data pipe name",
73 desc = "The name of the new data pipe which will be created by this user function by the copying of the selected data pipe."
74 )
75 uf.add_keyarg(
76 name = "bundle",
77 py_type = "str",
78 desc_short = "pipe bundle",
79 desc = "The optional pipe bundle is a special grouping or clustering of data pipes. If this is specified, the newly created data pipe will be added to this bundle.",
80 wiz_element_type = 'combo',
81 wiz_combo_iter = pipes.bundle_names,
82 wiz_read_only = False,
83 can_be_none = True
84 )
85 uf.add_keyarg(
86 name = "pipes",
87 py_type = "str_list_of_lists",
88 desc_short = "data pipes",
89 desc = "An array containing the names of all data pipes to include in model selection.",
90 wiz_element_type = 'combo_list',
91 wiz_combo_iter = pipes.pipe_names,
92 wiz_read_only = True,
93 can_be_none = True
94 )
95
96 uf.desc.append(Desc_container())
97 uf.desc[-1].add_paragraph("The following model selection methods are supported:")
98 uf.desc[-1].add_item_list_element("AIC", "Akaike's Information Criteria.")
99 uf.desc[-1].add_item_list_element("AICc", "Small sample size corrected AIC.")
100 uf.desc[-1].add_item_list_element("BIC", "Bayesian or Schwarz Information Criteria.")
101 uf.desc[-1].add_item_list_element("Bootstrap", "Bootstrap model selection.")
102 uf.desc[-1].add_item_list_element("CV", "Single-item-out cross-validation.")
103 uf.desc[-1].add_item_list_element("Expect", "The expected overall discrepancy (the true values of the parameters are required).")
104 uf.desc[-1].add_item_list_element("Farrow", "Old model-free method by Farrow et al., 1994.")
105 uf.desc[-1].add_item_list_element("Palmer", "Old model-free method by Mandel et al., 1995.")
106 uf.desc[-1].add_item_list_element("Overall", "The realised overall discrepancy (the true values of the parameters are required).")
107 uf.desc[-1].add_paragraph("For the methods 'Bootstrap', 'Expect', and 'Overall', the Monte Carlo simulations should have previously been executed with the monte_carlo.create_data method set to Bootstrapping to modify its behaviour.")
108 uf.desc[-1].add_paragraph("If the data pipes have not been specified, then all data pipes will be used for model selection.")
109
110 uf.desc.append(Desc_container("Prompt examples"))
111 uf.desc[-1].add_paragraph("For model-free analysis, if the preset models 1 to 5 are minimised and loaded into the program, the following commands will carry out AIC model selection and to place the selected results into the 'mixed' data pipe, type one of:")
112 uf.desc[-1].add_prompt("relax> model_selection('AIC', 'mixed')")
113 uf.desc[-1].add_prompt("relax> model_selection(method='AIC', modsel_pipe='mixed')")
114 uf.desc[-1].add_prompt("relax> model_selection('AIC', 'mixed', ['m1', 'm2', 'm3', 'm4', 'm5'])")
115 uf.desc[-1].add_prompt("relax> model_selection(method='AIC', modsel_pipe='mixed', pipes=['m1', 'm2', 'm3', 'm4', 'm5'])")
116 uf.backend = model_selection.select
117 uf.menu_text = "m&odel_selection"
118 uf.gui_icon = "relax.discrepancy_curve"
119 uf.wizard_height_desc = 450
120 uf.wizard_size = (900, 750)
121 uf.wizard_image = WIZARD_IMAGE_PATH + 'discrepancy_curve.png'
122