Source Code for Module bmrblib.assembly_supercategory.entity_v2_1

 1  ############################################################################# 
 2  #                                                                           # 
 3  # The BMRB library.                                                         # 
 4  #                                                                           # 
 5  # Copyright (C) 2009-2010 Edward d'Auvergne                                 # 
 6  #                                                                           # 
 7  # This program is free software: you can redistribute it and/or modify      # 
 8  # it under the terms of the GNU General Public License as published by      # 
 9  # the Free Software Foundation, either version 3 of the License, or         # 
10  # (at your option) any later version.                                       # 
11  #                                                                           # 
12  # This program is distributed in the hope that it will be useful,           # 
13  # but WITHOUT ANY WARRANTY; without even the implied warranty of            # 
14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the             # 
15  # GNU General Public License for more details.                              # 
16  #                                                                           # 
17  # You should have received a copy of the GNU General Public License         # 
18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.     # 
19  #                                                                           # 
20  ############################################################################# 
21   
22  # Module docstring. 
23  """The v2.1 entity saveframe category. 
24   
25  See http://www.bmrb.wisc.edu/dictionary/htmldocs/nmr_star/dictionary_files/complete_form_v21.txt. 
26  """ 
27   
28  # relax module imports. 
29  from bmrblib.assembly_supercategory.entity import EntitySaveframe, Entity, EntityCompIndex 
30   
31   
32 -class EntitySaveframe_v2_1(EntitySaveframe): 
33      """The v2.1 entity saveframe class.""" 
34   
35      # Class variables. 
36      sf_label = 'monomeric_polymer' 
37   
38 -    def add_tag_categories(self): 
39          """Create the v2.1 tag categories.""" 
40   
41          # The tag category objects. 
42          self.tag_categories.append(Entity_v2_1(self)) 
43          self.tag_categories.append(EntityCompIndex_v2_1(self)) 
44   
45   
46   
47 -class Entity_v2_1(Entity): 
48      """v2.1 Entity tag category.""" 
49   
50 -    def __init__(self, sf): 
51          """Setup the Entity tag category. 
52   
53          @param sf:  The saveframe object. 
54          @type sf:   saveframe instance 
55          """ 
56   
57          # Initialise the baseclass. 
58          super(Entity_v2_1, self).__init__(sf) 
59   
60          # Change tag names. 
61          self['SfCategory'].tag_name =               'Saveframe_category' 
62          self['Name'].tag_name =                     'Name_common' 
63          self['Type'].tag_name =                     'Mol_type' 
64          self['PolymerType'].tag_name =              'Mol_polymer_class' 
65          self['ThiolState'].tag_name =               'Mol_thiol_state' 
66          self['PolymerSeqOneLetterCode'].tag_name =  'Mol_residue_sequence' 
67          self['FormulaWeight'].tag_name =            'Molecular_mass' 
68          self['DBQueryDate'].tag_name =              'Sequence_homology_query_date' 
69          self['DBQueryRevisedLastDate'].tag_name =   'Sequence_homology_query_revised_last_date' 
70   
71   
72   
73 -class EntityCompIndex_v2_1(EntityCompIndex): 
74      """v2.1 EntityCompIndex tag category.""" 
75   
76 -    def __init__(self, sf): 
77          """Setup the EntityCompIndex_v2_1 tag category. 
78   
79          @param sf:  The saveframe object. 
80          @type sf:   saveframe instance 
81          """ 
82   
83          # Initialise the baseclass. 
84          super(EntityCompIndex_v2_1, self).__init__(sf) 
85   
86          # Change tag names. 
87          self['EntityCompIndexID'].tag_name =    'Residue_seq_code' 
88          self['CompID'].tag_name =               'Residue_label' 
89