Class Pymol

Class containing the Pymol specific functions for model-free analysis.

Instance Methods

classic_colour(self, res_num=None, width=None, rgb_array=None)
Colour the given peptide bond.

classic_header(self)
Create the header for the pymol macro.

pymol_macro(self, data_type, style=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)
Wrapper method for the create_macro method.

Inherited from macro_base.Macro: classic_correlation_time, classic_order_param, classic_rex, classic_style, create_macro

Class Variables

Inherited from macro_base.Macro: classic_style_doc, table

Method Details

pymol_macro(self, data_type, style=None, colour_start=None, colour_end=None, colour_list=None, spin_id=None)

Wrapper method for the create_macro method.

Parameters:

• data_type (str) - The parameter name or data type.
• style (None or str) - The Molmol style.
• colour_start (str) - The starting colour (must be a MOLMOL or X11 name).
• colour_end (str) - The ending colour (must be a MOLMOL or X11 name).
• colour_list (str) - The colour list used, either 'molmol' or 'x11'.
• spin_id (str) - The spin identification string.