Source Code for Module test_suite.unit_tests._specific_fns._model_free.test_main

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  2  #                                                                             # 
  3  # Copyright (C) 2008-2012 Edward d'Auvergne                                   # 
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  5  # This file is part of the program relax (http://www.nmr-relax.com).          # 
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 15  # GNU General Public License for more details.                                # 
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 20  ############################################################################### 
 21   
 22  # Python module imports. 
 23  from os import sep 
 24  import sys 
 25   
 26  # relax module imports. 
 27  from data import Relax_data_store; ds = Relax_data_store() 
 28  from generic_fns import pipes, results, structure 
 29  from relax_errors import RelaxError 
 30  from specific_fns.model_free import main 
 31  from status import Status; status = Status() 
 32  from test_suite.unit_tests.base_classes import UnitTestCase 
 33   
 34   
 35 -class Test_main(UnitTestCase): 
 36      """Unit tests for the class methods of specific_fns.model_free.main.Model_free_main.""" 
 37   
 38      # Instantiate the class. 
 39      inst = main.Model_free_main() 
 40   
 41   
 42 -    def setUp(self): 
 43          """Setup some structures for the unit tests.""" 
 44   
 45          # Create a model-free data pipe. 
 46          ds.add(pipe_name='orig', pipe_type='mf') 
 47   
 48   
 49 -    def test_duplicate_data1(self): 
 50          """Test the model-free duplicate_data() method.""" 
 51   
 52          # Duplicate the data. 
 53          self.inst.duplicate_data('orig', 'new', model_info=0) 
 54   
 55   
 56 -    def test_duplicate_data2(self): 
 57          """Test the model-free duplicate_data() method.""" 
 58   
 59          # Read a model-free results file. 
 60          results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 61   
 62          # Duplicate the data. 
 63          self.inst.duplicate_data('orig', 'new', model_info=0) 
 64   
 65   
 66 -    def test_duplicate_data3(self): 
 67          """Test the model-free duplicate_data() method.""" 
 68   
 69          # Read a model-free results file. 
 70          results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 71   
 72          # Load a structure. 
 73          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
 74   
 75          # Duplicate the data. 
 76          self.inst.duplicate_data('orig', 'new', model_info=0) 
 77   
 78          # Check the original data. 
 79          self.assert_(hasattr(pipes.get_pipe('orig'), 'structure')) 
 80   
 81          # Check the duplication. 
 82          self.assert_(hasattr(pipes.get_pipe('new'), 'structure')) 
 83   
 84   
 85 -    def test_duplicate_data_single_mf_model(self): 
 86          """Test the model-free duplicate_data() method.""" 
 87   
 88          # Read a model-free results file. 
 89          results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
 90   
 91          # Load a structure. 
 92          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
 93   
 94          # Duplicate the data, model by model. 
 95          self.inst.duplicate_data('orig', 'new', model_info=0) 
 96          self.inst.duplicate_data('orig', 'new', model_info=1) 
 97          self.inst.duplicate_data('orig', 'new', model_info=2) 
 98          self.inst.duplicate_data('orig', 'new', model_info=3) 
 99   
100   
101 -    def test_duplicate_data_fail1(self): 
102          """Test the failure of the model-free duplicate_data() method when the structures are not consistent.""" 
103   
104          # Read a model-free results file. 
105          results.read(file='final_results_trunc_1.3_v1', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
106   
107          # Load a structure. 
108          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
109   
110          # Create a new model-free data pipe. 
111          ds.add(pipe_name='new', pipe_type='mf') 
112   
113          # Load the structure for the second pipe. 
114          structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1, parser='internal') 
115   
116          # Modify the structure. 
117          dp = pipes.get_pipe('new') 
118          dp.structure.structural_data[0].mol[0].file_name = 'test' 
119   
120          # Duplicate the data and catch the error. 
121          self.assertRaises(RelaxError, self.inst.duplicate_data, 'orig', 'new', model_info=0) 
122