__init__(self,
data_pipe_full=None,
data_pipe_subset=None,
pipe_bundle=None,
results_dir=None,
grid_inc=11,
grid_inc_rigid=21,
min_algor=' simplex ' ,
num_int_pts_grid=50,
num_int_pts_subset=[ 20, 100] ,
func_tol_subset=[ 0.01, 0.01] ,
num_int_pts_full=[ 100, 1000, 200000] ,
func_tol_full=[ 0.01, 0.001, 0.0001] ,
mc_sim_num=500,
mc_int_pts=1000,
mc_func_tol=0.001,
models=[ ' rigid ' , ' free rotor ' , ' rotor ' , ' iso cone, free rotor ' , ' iso ... )
(Constructor)
| source code
|
Perform the full frame order analysis.
- Parameters:
data_pipe_full (str) - The name of the data pipe containing all of the RDC and PCS data.
data_pipe_subset (str) - The name of the data pipe containing all of the RDC data but only
a small subset of ~5 PCS points.
pipe_bundle (str) - The data pipe bundle to associate all spawned data pipes with.
results_dir (str) - The directory where files are saved in.
grid_inc (int) - The number of grid increments to use in the grid search of
certain models.
grid_inc_rigid (int) - The number of grid increments to use in the grid search of the
initial rigid model.
min_algor (str) - The minimisation algorithm (in most cases this should not be
changed).
num_int_pts_grid (int) - The number of Sobol' points for the PCS numerical integration in
the grid searches.
num_int_pts_subset (list of int) - The list of the number of Sobol' points for the PCS numerical
integration to use iteratively in the optimisations after the
grid search (for the PCS data subset).
func_tol_subset (list of float) - The minimisation function tolerance cutoff to terminate
optimisation (for the PCS data subset, see the minimise user
function).
num_int_pts_full (list of int) - The list of the number of Sobol' points for the PCS numerical
integration to use iteratively in the optimisations after the
grid search (for all PCS and RDC data).
func_tol_full (list of float) - The minimisation function tolerance cutoff to terminate
optimisation (for all PCS and RDC data, see the minimise user
function).
mc_sim_num (int) - The number of Monte Carlo simulations to be used for error
analysis at the end of the analysis.
mc_int_num (int) - The number of Sobol' points for the PCS numerical integration
during Monte Carlo simulations.
mc_func_tol (float) - The minimisation function tolerance cutoff to terminate
optimisation during Monte Carlo simulations.
models (list of str) - The frame order models to use in the analysis. The 'rigid' model
must be included as this is essential for the analysis.
|