Package specific_analyses :: Package relax_disp :: Module variables

[frames] | no frames]

Module variables

source code

Variables for the relaxation dispersion specific analysis.

Variables

[hide private]

EXP_TYPE_CPMG_SQ = 'SQ CPMG'

EXP_TYPE_CPMG_DQ = 'DQ CPMG'

EXP_TYPE_CPMG_MQ = 'MQ CPMG'

EXP_TYPE_CPMG_ZQ = 'ZQ CPMG'

EXP_TYPE_CPMG_PROTON_SQ = '1H SQ CPMG'

EXP_TYPE_CPMG_PROTON_MQ = '1H MQ CPMG'

EXP_TYPE_R1RHO = 'R1rho'

EXP_TYPE_DESC_CPMG_SQ = 'the standard single quantum (SQ) CPMG...

EXP_TYPE_DESC_CPMG_DQ = 'the double quantum (DQ) CPMG-type exp...

EXP_TYPE_DESC_CPMG_MQ = 'the multiple quantum (MQ) CPMG-type e...

EXP_TYPE_DESC_CPMG_ZQ = 'the zero quantum (ZQ) CPMG-type exper...

EXP_TYPE_DESC_CPMG_PROTON_SQ = 'the 1H single quantum (SQ) CPM...

EXP_TYPE_DESC_CPMG_PROTON_MQ = 'the 1H multiple quantum (MQ) C...

EXP_TYPE_DESC_R1RHO = 'the R1rho-type experiment'

EXP_TYPE_LIST = ['SQ CPMG', 'DQ CPMG', 'MQ CPMG', 'ZQ CPMG', '...
The list of all dispersion experiment types.

EXP_TYPE_LIST_CPMG = ['SQ CPMG', 'DQ CPMG', 'MQ CPMG', 'ZQ CPM...
The list of all dispersion experiment types for CPMG-type data.

EXP_TYPE_LIST_R1RHO = ['R1rho']
The list of all dispersion experiment types for R1rho-type data.

MODEL_R2EFF = 'R2eff'
The model for determining the R2eff/R1rho values from peak intensities.

MODEL_NOREX = 'No Rex'
The model for no chemical exchange relaxation.

MODEL_LM63 = 'LM63'
The CPMG 2-site fast exchange model of Luz and Meiboom (1963).

MODEL_LM63_3SITE = 'LM63 3-site'
The CPMG 3-site fast exchange model of Luz and Meiboom (1963).

MODEL_CR72 = 'CR72'
The CPMG 2-site model for all time scales of Carver and Richards (1972), whereby the simplification R20A = R20B is assumed.

MODEL_CR72_FULL = 'CR72 full'
The CPMG 2-site model for all time scales of Carver and Richards (1972).

MODEL_IT99 = 'IT99'
The CPMG 2-site model for all time scales with pA >> pB of Ishima and Torchia (1999).

MODEL_TSMFK01 = 'TSMFK01'
The CPMG 2-site very-slow exchange model, range of microsecond to second time scale, of M.

MODEL_M61 = 'M61'
The R1rho 2-site fast exchange model of Meiboom (1961).

MODEL_M61B = 'M61 skew'
The R1rho 2-site model for all time scales with pA >> pB of Meiboom (1961).

MODEL_DPL94 = 'DPL94'
The R1rho 2-site fast exchange model of Davis, Perlman and London (1994).

MODEL_TP02 = 'TP02'
The R1rho 2-site exchange model of Trott and Palmer (2002).

MODEL_TAP03 = 'TAP03'
The R1rho 2-site exchange model of Trott, Abergel and Palmer (2003).

MODEL_MP05 = 'MP05'
The R1rho 2-site off-resonance exchange model of Miloushev and Palmer (2005).

MODEL_NS_CPMG_2SITE_3D = 'NS CPMG 2-site 3D'
The numerical solution for the 2-site Bloch-McConnell equations for CPMG data using 3D magnetisation vectors, whereby the simplification R20A = R20B is assumed.

MODEL_NS_CPMG_2SITE_3D_FULL = 'NS CPMG 2-site 3D full'
The numerical solution for the 2-site Bloch-McConnell equations for CPMG data using 3D magnetisation vectors.

MODEL_NS_CPMG_2SITE_STAR = 'NS CPMG 2-site star'
The numerical solution for the 2-site Bloch-McConnell equations for CPMG data using complex conjugate matrices, whereby the simplification R20A = R20B is assumed.

MODEL_NS_CPMG_2SITE_STAR_FULL = 'NS CPMG 2-site star full'
The numerical solution for the 2-site Bloch-McConnell equations for CPMG data using complex conjugate matrices.

MODEL_NS_CPMG_2SITE_EXPANDED = 'NS CPMG 2-site expanded'
The numerical solution for the 2-site Bloch-McConnell equations for CPMG data expanded using Maple by Nikolai Skrynnikov.

MODEL_NS_R1RHO_2SITE = 'NS R1rho 2-site'
The numerical solution for the 2-site Bloch-McConnell equations for R1rho data, whereby the simplification R20A = R20B is assumed.

MODEL_NS_R1RHO_3SITE = 'NS R1rho 3-site'
The numerical solution for the 3-site Bloch-McConnell equations for R1rho data, whereby the simplification R20A = R20B = R20C is assumed.

MODEL_NS_R1RHO_3SITE_LINEAR = 'NS R1rho 3-site linear'
The numerical solution for the 3-site Bloch-McConnell equations for R1rho data linearised with kAC = kCA = 0, whereby the simplification R20A = R20B = R20C is assumed.

MODEL_MMQ_CR72 = 'MMQ CR72'
The Carver and Richards (1972) 2-site model for all time scales extended for MMQ CPMG data.

MODEL_NS_MMQ_2SITE = 'NS MMQ 2-site'
The numerical solution for the 2-site Bloch-McConnell equations for combined proton-heteronuclear SQ, ZQ, DQ, and MQ CPMG data.

MODEL_NS_MMQ_3SITE = 'NS MMQ 3-site'
The numerical solution for the 3-site Bloch-McConnell equations for combined proton-heteronuclear SQ, ZQ, DQ, and MQ CPMG data.

MODEL_NS_MMQ_3SITE_LINEAR = 'NS MMQ 3-site linear'
The numerical solution for the 3-site Bloch-McConnell equations with kAC = kCA = 0 for combined proton-heteronuclear SQ, ZQ, DQ, and MQ CPMG data.

MODEL_LIST_DISP = ['No Rex', 'LM63', 'LM63 3-site', 'CR72', 'C...
The list of all dispersion models (excluding the R2eff model).

MODEL_LIST_FULL = ['R2eff', 'No Rex', 'LM63', 'LM63 3-site', '...
The list of the R2eff model together with all dispersion models.

MODEL_LIST_CPMG = ['No Rex', 'LM63', 'LM63 3-site', 'CR72', 'C...
The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model).

MODEL_LIST_CPMG_FULL = ['R2eff', 'No Rex', 'LM63', 'LM63 3-sit...
The list of the R2eff model together with all dispersion models specifically for CPMG-type experiments.

MODEL_LIST_R1RHO = ['No Rex', 'M61', 'M61 skew', 'DPL94', 'TP0...
The list of all dispersion models specifically for R1rho-type experiments (excluding the R2eff model).

MODEL_LIST_R1RHO_FULL = ['R2eff', 'No Rex', 'M61', 'M61 skew',...
The list of the R2eff model together with all dispersion models specifically for R1rho-type experiments.

MODEL_LIST_MQ_CPMG = ['No Rex', 'MMQ CR72', 'NS MMQ 2-site', '...
The list of all dispersion models specifically for MQ CPMG-type experiments (excluding the R2eff model).

MODEL_LIST_MQ_CPMG_FULL = ['R2eff', 'No Rex', 'MMQ CR72', 'NS ...
The list of the R2eff model together with all dispersion models specifically for MQ CPMG-type experiments.

MODEL_LIST_MMQ = ['MMQ CR72', 'NS MMQ 2-site', 'NS MMQ 3-site'...
The list of all dispersion models specifically for MMQ CPMG-type experiments.

MODEL_LIST_ANALYTIC = ['LM63', 'LM63 3-site', 'CR72', 'CR72 fu...
The list of all analytic models.

MODEL_LIST_NUMERIC = ['NS CPMG 2-site 3D', 'NS CPMG 2-site 3D ...
The list of all numeric models.

MODEL_LIST_NUMERIC_CPMG = ['NS CPMG 2-site 3D', 'NS CPMG 2-sit...
The list of all numeric models.

__package__ = None
hash(x)

Variables Details

[hide private]

EXP_TYPE_DESC_CPMG_SQ

Value:

'the standard single quantum (SQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_DQ

Value:

'the double quantum (DQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_MQ

Value:

'the multiple quantum (MQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_ZQ

Value:

'the zero quantum (ZQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_PROTON_SQ

Value:

'the 1H single quantum (SQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_PROTON_MQ

Value:

'the 1H multiple quantum (MQ) CPMG-type experiment'

EXP_TYPE_LIST

The list of all dispersion experiment types.

Value:

['SQ CPMG',
 'DQ CPMG',
 'MQ CPMG',
 'ZQ CPMG',
 '1H SQ CPMG',
 '1H MQ CPMG',
 'R1rho']

EXP_TYPE_LIST_CPMG

The list of all dispersion experiment types for CPMG-type data.

Value:

['SQ CPMG',
 'DQ CPMG',
 'MQ CPMG',
 'ZQ CPMG',
 '1H SQ CPMG',
 '1H MQ CPMG']

MODEL_TSMFK01

The CPMG 2-site very-slow exchange model, range of microsecond to second time scale, of M. Tollinger, N.R. Skrynnikov, F.A.A. Mulder, J.D.F. Kay and L.E. Kay (2001).

Value:

'TSMFK01'

MODEL_LIST_DISP

The list of all dispersion models (excluding the R2eff model).

Value:

['No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'M61',
...

MODEL_LIST_FULL

The list of the R2eff model together with all dispersion models.

Value:

['R2eff',
 'No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
...

MODEL_LIST_CPMG

The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'NS CPMG 2-site 3D',
...

MODEL_LIST_CPMG_FULL

The list of the R2eff model together with all dispersion models specifically for CPMG-type experiments.

Value:

['R2eff',
 'No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
...

MODEL_LIST_R1RHO

The list of all dispersion models specifically for R1rho-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'M61',
 'M61 skew',
 'DPL94',
 'TP02',
 'TAP03',
 'MP05',
 'NS R1rho 2-site',
...

MODEL_LIST_R1RHO_FULL

The list of the R2eff model together with all dispersion models specifically for R1rho-type experiments.

Value:

['R2eff',
 'No Rex',
 'M61',
 'M61 skew',
 'DPL94',
 'TP02',
 'TAP03',
 'MP05',
...

MODEL_LIST_MQ_CPMG

The list of all dispersion models specifically for MQ CPMG-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'MMQ CR72',
 'NS MMQ 2-site',
 'NS MMQ 3-site',
 'NS MMQ 3-site linear']

MODEL_LIST_MQ_CPMG_FULL

The list of the R2eff model together with all dispersion models specifically for MQ CPMG-type experiments.

Value:

['R2eff',
 'No Rex',
 'MMQ CR72',
 'NS MMQ 2-site',
 'NS MMQ 3-site',
 'NS MMQ 3-site linear']

MODEL_LIST_MMQ

The list of all dispersion models specifically for MMQ CPMG-type experiments.

Value:

['MMQ CR72', 'NS MMQ 2-site', 'NS MMQ 3-site', 'NS MMQ 3-site linear']

MODEL_LIST_ANALYTIC

The list of all analytic models.

Value:

['LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'M61',
 'M61 skew',
...

MODEL_LIST_NUMERIC

The list of all numeric models.

Value:

['NS CPMG 2-site 3D',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site star',
 'NS CPMG 2-site star full',
 'NS CPMG 2-site expanded',
 'NS R1rho 2-site',
 'NS R1rho 3-site',
 'NS R1rho 3-site linear',
...

MODEL_LIST_NUMERIC_CPMG

The list of all numeric models.

Value:

['NS CPMG 2-site 3D',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site star',
 'NS CPMG 2-site star full',
 'NS CPMG 2-site expanded',
 'NS MMQ 2-site',
 'NS MMQ 3-site',
 'NS MMQ 3-site linear']