Source Code for Module bmrblib.citations.citations

  1  ############################################################################# 
  2  #                                                                           # 
  3  # The BMRB library.                                                         # 
  4  #                                                                           # 
  5  # Copyright (C) 2009-2013 Edward d'Auvergne                                 # 
  6  #                                                                           # 
  7  # This program is free software: you can redistribute it and/or modify      # 
  8  # it under the terms of the GNU General Public License as published by      # 
  9  # the Free Software Foundation, either version 3 of the License, or         # 
 10  # (at your option) any later version.                                       # 
 11  #                                                                           # 
 12  # This program is distributed in the hope that it will be useful,           # 
 13  # but WITHOUT ANY WARRANTY; without even the implied warranty of            # 
 14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the             # 
 15  # GNU General Public License for more details.                              # 
 16  #                                                                           # 
 17  # You should have received a copy of the GNU General Public License         # 
 18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.     # 
 19  #                                                                           # 
 20  ############################################################################# 
 21   
 22  # Module docstring. 
 23  """The citations saveframe category. 
 24   
 25  This file is part of the U{BMRB library<https://sourceforge.net/projects/bmrblib>}. 
 26   
 27  For example, see http://www.bmrb.wisc.edu/dictionary/3.1html/SaveFramePage.html#citations. 
 28  """ 
 29   
 30  # relax module imports. 
 31  from bmrblib.base_classes import BaseSaveframe, TagCategory, TagCategoryFree 
 32   
 33   
 34 -class CitationsSaveframe(BaseSaveframe): 
 35      """The citations saveframe class.""" 
 36   
 37      # Class variables. 
 38      label = 'citation' 
 39      sf_label = 'citations' 
 40   
 41 -    def add_tag_categories(self): 
 42          """Create the tag categories.""" 
 43   
 44          # The tag category objects. 
 45          self.tag_categories.append(Citations(self)) 
 46          self.tag_categories.append(CitationsAuthor(self)) 
 47   
 48   
 49   
 50 -class Citations(TagCategoryFree): 
 51      """Base class for the Citations tag category.""" 
 52   
 53 -    def __init__(self, sf): 
 54          """Setup the Citations tag category. 
 55   
 56          @param sf:  The saveframe object. 
 57          @type sf:   saveframe instance 
 58          """ 
 59   
 60          # Initialise the baseclass. 
 61          super(Citations, self).__init__(sf) 
 62   
 63          # Add the tag info. 
 64          self.add(key='CitationID',                  tag_name='ID',                          var_name='count_str') 
 65          self.add(key='CASAbstractCode',             tag_name='CAS_abstract_code',           var_name='cas_abstract_code') 
 66          self.add(key='MEDLINEUICode',               tag_name='MEDLINE_UI_code',             var_name='medline_ui_code') 
 67          self.add(key='DOI',                         tag_name='DOI',                         var_name='doi') 
 68          self.add(key='PubMedID',                    tag_name='PubMed_ID',                   var_name='pubmed_id') 
 69          self.add(key='FullCitation',                tag_name='Full_citation',               var_name='full_citation') 
 70          self.add(key='Title',                       tag_name='Title',                       var_name='title') 
 71          self.add(key='Status',                      tag_name='Status',                      var_name='status') 
 72          self.add(key='Type',                        tag_name='Type',                        var_name='type') 
 73          self.add(key='JournalAbbrev',               tag_name='Journal_abbrev',              var_name='journal_abbrev') 
 74          self.add(key='JournalNameFull',             tag_name='Journal_name_full',           var_name='journal_full') 
 75          self.add(key='JournalVolume',               tag_name='Journal_volume',              var_name='volume') 
 76          self.add(key='JournalIssue',                tag_name='Journal_issue',               var_name='issue') 
 77          self.add(key='JournalASTM',                 tag_name='Journal_ASTM',                var_name=None) 
 78          self.add(key='JournalISSN',                 tag_name='Journal_ISSN',                var_name=None) 
 79          self.add(key='JournalCSD',                  tag_name='Journal_CSD',                 var_name=None) 
 80          self.add(key='BookTitle',                   tag_name='Book_title',                  var_name=None) 
 81          self.add(key='BookChapterTitle',            tag_name='Book_chapter_title',          var_name=None) 
 82          self.add(key='BookVolume',                  tag_name='Book_volume',                 var_name=None) 
 83          self.add(key='BookSeries',                  tag_name='Book_series',                 var_name=None) 
 84          self.add(key='BookPublisher',               tag_name='Book_publisher',              var_name=None) 
 85          self.add(key='BookPublisherCity',           tag_name='Book_publisher_city',         var_name=None) 
 86          self.add(key='BookISBN',                    tag_name='Book_ISBN',                   var_name=None) 
 87          self.add(key='ConferenceTitle',             tag_name='Conference_title',            var_name=None) 
 88          self.add(key='ConferenceSite',              tag_name='Conference_site',             var_name=None) 
 89          self.add(key='ConferenceStateProvince',     tag_name='Conference_state_province',   var_name=None) 
 90          self.add(key='ConferenceCountry',           tag_name='Conference_country',          var_name=None) 
 91          self.add(key='ConferenceStartDate',         tag_name='Conference_start_date',       var_name=None) 
 92          self.add(key='ConferenceEndDate',           tag_name='Conference_end_date',         var_name=None) 
 93          self.add(key='ConferenceAbstractNumber',    tag_name='Conference_abstract_number',  var_name=None) 
 94          self.add(key='ThesisInstitution',           tag_name='Thesis_institution',          var_name=None) 
 95          self.add(key='ThesisInstitutionCity',       tag_name='Thesis_institution_city',     var_name=None) 
 96          self.add(key='ThesisInstitutionCountry',    tag_name='Thesis_institution_country',  var_name=None) 
 97          self.add(key='WWWURL',                      tag_name='WWW_URL',                     var_name=None) 
 98          self.add(key='PageFirst',                   tag_name='Page_first',                  var_name='page_first') 
 99          self.add(key='PageLast',                    tag_name='Page_last',                   var_name='page_last') 
100          self.add(key='Year',                        tag_name='Year',                        var_name='year') 
101          self.add(key='Details',                     tag_name='Details',                     var_name=None) 
102   
103   
104   
105 -class CitationsAuthor(TagCategory): 
106      """Base class for the CitationsAuthor tag category.""" 
107   
108 -    def __init__(self, sf): 
109          """Setup the CitationsAuthor tag category. 
110   
111          @param sf:  The saveframe object. 
112          @type sf:   saveframe instance 
113          """ 
114   
115          # Initialise the baseclass. 
116          super(CitationsAuthor, self).__init__(sf) 
117   
118          # Add the tag info. 
119          self.add(key='Ordinal',         tag_name='Ordinal',         var_name='data_ids') 
120          self.add(key='GivenName',       tag_name='Given_name',      var_name='author_given_name') 
121          self.add(key='FamilyName',      tag_name='Family_name',     var_name='author_family_name') 
122          self.add(key='FirstInitial',    tag_name='First_initial',   var_name='author_first_init') 
123          self.add(key='MiddleInitials',  tag_name='Middle_initials', var_name='author_mid_init') 
124          self.add(key='FamilyTitle',     tag_name='Family_title',    var_name='author_family_title') 
125          self.add(key='SfID',            tag_name='Sf_ID',           var_name=None) 
126          self.add(key='EntryID',         tag_name='Entry_ID',        var_name=None) 
127          self.add(key='CitationID',      tag_name='Citation_ID',     var_name='count_str') 
128