Source Code for Module test_suite.unit_tests._prompt.test_spectrum

  1  ############################################################################### 
  2  #                                                                             # 
  3  # Copyright (C) 2008-2014 Edward d'Auvergne                                   # 
  4  #                                                                             # 
  5  # This file is part of the program relax (http://www.nmr-relax.com).          # 
  6  #                                                                             # 
  7  # This program is free software: you can redistribute it and/or modify        # 
  8  # it under the terms of the GNU General Public License as published by        # 
  9  # the Free Software Foundation, either version 3 of the License, or           # 
 10  # (at your option) any later version.                                         # 
 11  #                                                                             # 
 12  # This program is distributed in the hope that it will be useful,             # 
 13  # but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
 14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the               # 
 15  # GNU General Public License for more details.                                # 
 16  #                                                                             # 
 17  # You should have received a copy of the GNU General Public License           # 
 18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.       # 
 19  #                                                                             # 
 20  ############################################################################### 
 21   
 22  # Python module imports. 
 23  from unittest import TestCase 
 24   
 25  # relax module imports. 
 26  from prompt.interpreter import Interpreter 
 27  from lib.errors import RelaxIntError, RelaxNoneIntError, RelaxNoneIntListIntError, RelaxNoneStrError, RelaxNumError, RelaxStrError, RelaxStrListStrError 
 28   
 29  # Unit test imports. 
 30  from test_suite.unit_tests._prompt.data_types import DATA_TYPES 
 31   
 32   
 33 -class Test_spectrum(TestCase): 
 34      """Unit tests for the functions of the 'prompt.spectrum' module.""" 
 35   
 36 -    def __init__(self, methodName=None): 
 37          """Set up the test case class for the system tests.""" 
 38   
 39          # Execute the base __init__ methods. 
 40          super(Test_spectrum, self).__init__(methodName) 
 41   
 42          # Load the interpreter. 
 43          self.interpreter = Interpreter(show_script=False, raise_relax_error=True) 
 44          self.interpreter.populate_self() 
 45          self.interpreter.on(verbose=False) 
 46   
 47          # Alias the user function class. 
 48          self.spectrum_fns = self.interpreter.spectrum 
 49   
 50   
 51 -    def test_baseplane_rmsd_argfail_error(self): 
 52          """The error arg test of the spectrum.baseplane_rmsd() user function.""" 
 53   
 54          # Loop over the data types. 
 55          for data in DATA_TYPES: 
 56              # Catch the float, bin, and int arguments, and skip them. 
 57              if data[0] == 'float' or data[0] == 'bin' or data[0] == 'int': 
 58                  continue 
 59   
 60              # The argument test. 
 61              self.assertRaises(RelaxNumError, self.spectrum_fns.baseplane_rmsd, error=data[1]) 
 62   
 63   
 64 -    def test_baseplane_rmsd_argfail_spectrum_id(self): 
 65          """The spectrum_id arg test of the spectrum.baseplane_rmsd() user function.""" 
 66   
 67          # Loop over the data types. 
 68          for data in DATA_TYPES: 
 69              # Catch the str arguments, and skip them. 
 70              if data[0] == 'str': 
 71                  continue 
 72   
 73              # The argument test. 
 74              self.assertRaises(RelaxStrError, self.spectrum_fns.baseplane_rmsd, spectrum_id=data[1]) 
 75   
 76   
 77 -    def test_baseplane_rmsd_argfail_spin_id(self): 
 78          """The spin_id arg test of the spectrum.baseplane_rmsd() user function.""" 
 79   
 80          # Loop over the data types. 
 81          for data in DATA_TYPES: 
 82              # Catch the None and str arguments, and skip them. 
 83              if data[0] == 'None' or data[0] == 'str': 
 84                  continue 
 85   
 86              # The argument test. 
 87              self.assertRaises(RelaxNoneStrError, self.spectrum_fns.baseplane_rmsd, spectrum_id='x', spin_id=data[1]) 
 88   
 89   
 90 -    def test_integration_points_argfail_N(self): 
 91          """The N arg test of the spectrum.integration_points() user function.""" 
 92   
 93          # Loop over the data types. 
 94          for data in DATA_TYPES: 
 95              # Catch the bin and int arguments, and skip them. 
 96              if data[0] == 'bin' or data[0] == 'int': 
 97                  continue 
 98   
 99              # The argument test. 
100              self.assertRaises(RelaxIntError, self.spectrum_fns.integration_points, N=data[1]) 
101   
102   
103 -    def test_integration_points_argfail_spectrum_id(self): 
104          """The spectrum_id arg test of the spectrum.integration_points() user function.""" 
105   
106          # Loop over the data types. 
107          for data in DATA_TYPES: 
108              # Catch the str arguments, and skip them. 
109              if data[0] == 'str': 
110                  continue 
111   
112              # The argument test. 
113              self.assertRaises(RelaxStrError, self.spectrum_fns.integration_points, N=0, spectrum_id=data[1]) 
114   
115   
116 -    def test_integration_points_argfail_spin_id(self): 
117          """The spin_id arg test of the spectrum.integration_points() user function.""" 
118   
119          # Loop over the data types. 
120          for data in DATA_TYPES: 
121              # Catch the None and str arguments, and skip them. 
122              if data[0] == 'None' or data[0] == 'str': 
123                  continue 
124   
125              # The argument test. 
126              self.assertRaises(RelaxNoneStrError, self.spectrum_fns.integration_points, N=0, spectrum_id='x', spin_id=data[1]) 
127   
128   
129 -    def test_read_intensities_argfail_file(self): 
130          """The file arg test of the spectrum.read_intensities() user function.""" 
131   
132          # Loop over the data types. 
133          for data in DATA_TYPES: 
134              # Catch the str argument, and skip it. 
135              if data[0] == 'str': 
136                  continue 
137   
138              # The argument test. 
139              self.assertRaises(RelaxStrListStrError, self.spectrum_fns.read_intensities, file=data[1]) 
140   
141   
142 -    def test_read_intensities_argfail_dir(self): 
143          """The dir arg test of the spectrum.read_intensities() user function.""" 
144   
145          # Loop over the data types. 
146          for data in DATA_TYPES: 
147              # Catch the None and str arguments, and skip them. 
148              if data[0] == 'None' or data[0] == 'str': 
149                  continue 
150   
151              # The argument test. 
152              self.assertRaises(RelaxNoneStrError, self.spectrum_fns.read_intensities, file='a', dir=data[1]) 
153   
154   
155 -    def test_read_intensities_argfail_spectrum_id(self): 
156          """The spectrum_id arg test of the spectrum.read_intensities() user function.""" 
157   
158          # Loop over the data types. 
159          for data in DATA_TYPES: 
160              # Catch the str arguments, and skip them. 
161              if data[0] == 'str': 
162                  continue 
163   
164              # The argument test. 
165              self.assertRaises(RelaxStrListStrError, self.spectrum_fns.read_intensities, spectrum_id=data[1]) 
166   
167   
168 -    def test_read_intensities_argfail_dim(self): 
169          """The dim arg test of the spectrum.read_intensities() user function.""" 
170   
171          # Loop over the data types. 
172          for data in DATA_TYPES: 
173              # Catch the int argument, and skip it. 
174              if data[0] == 'int' or data[0] == 'bin': 
175                  continue 
176   
177              # The argument test. 
178              self.assertRaises(RelaxIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', dim=data[1]) 
179   
180   
181 -    def test_read_intensities_argfail_int_col(self): 
182          """The int_col arg test of the spectrum.read_intensities() user function.""" 
183   
184          # Loop over the data types. 
185          for data in DATA_TYPES: 
186              # Catch the None, int, bin, or integer list arguments, and skip them. 
187              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin' or data[0] == 'int list': 
188                  continue 
189   
190              # The argument test. 
191              self.assertRaises(RelaxNoneIntListIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_col=data[1]) 
192   
193   
194 -    def test_read_intensities_argfail_int_method(self): 
195          """The int_method arg test of the spectrum.read_intensities() user function.""" 
196   
197          # Loop over the data types. 
198          for data in DATA_TYPES: 
199              # Catch the str argument, and skip it. 
200              if data[0] == 'str': 
201                  continue 
202   
203              # The argument test. 
204              self.assertRaises(RelaxStrError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method=data[1]) 
205   
206   
207 -    def test_read_intensities_argfail_mol_name_col(self): 
208          """The mol_name_col arg test of the spectrum.read_intensities() user function.""" 
209   
210          # Loop over the data types. 
211          for data in DATA_TYPES: 
212              # Catch the None, int, and bin arguments, and skip them. 
213              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin': 
214                  continue 
215   
216              # The argument test. 
217              self.assertRaises(RelaxNoneIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', mol_name_col=data[1]) 
218   
219   
220 -    def test_read_intensities_argfail_res_num_col(self): 
221          """The res_num_col arg test of the spectrum.read_intensities() user function.""" 
222   
223          # Loop over the data types. 
224          for data in DATA_TYPES: 
225              # Catch the None, int, and bin arguments, and skip them. 
226              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin': 
227                  continue 
228   
229              # The argument test. 
230              self.assertRaises(RelaxNoneIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', res_num_col=data[1]) 
231   
232   
233 -    def test_read_intensities_argfail_res_name_col(self): 
234          """The res_name_col arg test of the spectrum.read_intensities() user function.""" 
235   
236          # Loop over the data types. 
237          for data in DATA_TYPES: 
238              # Catch the None, int, and bin arguments, and skip them. 
239              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin': 
240                  continue 
241   
242              # The argument test. 
243              self.assertRaises(RelaxNoneIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', res_name_col=data[1]) 
244   
245   
246 -    def test_read_intensities_argfail_spin_num_col(self): 
247          """The spin_num_col arg test of the spectrum.read_intensities() user function.""" 
248   
249          # Loop over the data types. 
250          for data in DATA_TYPES: 
251              # Catch the None, int, and bin arguments, and skip them. 
252              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin': 
253                  continue 
254   
255              # The argument test. 
256              self.assertRaises(RelaxNoneIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', spin_num_col=data[1]) 
257   
258   
259 -    def test_read_intensities_argfail_spin_name_col(self): 
260          """The spin_name_col arg test of the spectrum.read_intensities() user function.""" 
261   
262          # Loop over the data types. 
263          for data in DATA_TYPES: 
264              # Catch the None, int, and bin arguments, and skip them. 
265              if data[0] == 'None' or data[0] == 'int' or data[0] == 'bin': 
266                  continue 
267   
268              # The argument test. 
269              self.assertRaises(RelaxNoneIntError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', spin_name_col=data[1]) 
270   
271   
272 -    def test_read_intensities_argfail_sep(self): 
273          """The sep arg test of the spectrum.read_intensities() user function.""" 
274   
275          # Loop over the data types. 
276          for data in DATA_TYPES: 
277              # Catch the None and str arguments, and skip them. 
278              if data[0] == 'None' or data[0] == 'str': 
279                  continue 
280   
281              # The argument test. 
282              self.assertRaises(RelaxNoneStrError, self.spectrum_fns.read_intensities, file='a', spectrum_id='x', int_method='y', sep=data[1]) 
283