TestCase class for the functional tests of the frame order
theories.
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__init__(self,
methodName=' runTest ' ,
skip_tests=True)
Skip the tests if scipy is not installed. |
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check_chi2(self,
chi2=0.0,
places=1)
Check the function evaluation. |
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flags(self,
rdc=True,
pcs=True,
opt=False)
Set a number of flags for the scripts. |
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str
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space_probe(self,
ref_chi2=None,
params=None,
delta=0.0523598775598)
Probe the space around the supposed minimum. |
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test_cam_double_rotor(self)
Test the double rotor frame order model of CaM. |
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test_cam_double_rotor_pcs(self)
Test the double rotor frame order model of CaM (with only PCS data). |
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test_cam_double_rotor_rdc(self)
Test the double rotor frame order model of CaM (with only RDC data). |
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test_cam_free_rotor(self)
Test the free rotor frame order model of CaM. |
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test_cam_free_rotor_missing_data(self)
Test the free rotor frame order model of CaM. |
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test_cam_free_rotor_pcs(self)
Test the free rotor frame order model of CaM (with only PCS data). |
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test_cam_free_rotor_rdc(self)
Test the free rotor frame order model of CaM (with only RDC data). |
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test_cam_free_rotor2(self)
Test the second free rotor frame order model of CaM. |
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test_cam_free_rotor2_pcs(self)
Test the second free rotor frame order model of CaM (with only PCS
data). |
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test_cam_free_rotor2_rdc(self)
Test the second free rotor frame order model of CaM (with only RDC
data). |
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test_cam_iso_cone(self)
Test the isotropic cone, free rotor frame order model of CaM. |
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test_cam_iso_cone_pcs(self)
Test the isotropic cone, free rotor frame order model of CaM (with
only PCS data). |
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test_cam_iso_cone_rdc(self)
Test the isotropic cone, free rotor frame order model of CaM (with
only RDC data). |
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test_cam_iso_cone_free_rotor(self)
Test the isotropic cone, free rotor frame order model of CaM. |
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test_cam_iso_cone_free_rotor_pcs(self)
Test the isotropic cone, free rotor frame order model of CaM (with
only PCS data). |
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test_cam_iso_cone_free_rotor_rdc(self)
Test the isotropic cone, free rotor frame order model of CaM (with
only RDC data). |
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test_cam_iso_cone_free_rotor2(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_iso_cone_free_rotor2_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_iso_cone_free_rotor2_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_iso_cone_torsionless(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_iso_cone_torsionless_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_iso_cone_torsionless_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_pseudo_ellipse(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_pseudo_ellipse_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_pseudo_ellipse_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_pseudo_ellipse2(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_pseudo_ellipse2_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_pseudo_ellipse2_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_pseudo_ellipse_free_rotor(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_pseudo_ellipse_free_rotor_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_pseudo_ellipse_free_rotor_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_pseudo_ellipse_torsionless(self)
Test the second isotropic cone, free rotor frame order model of CaM. |
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test_cam_pseudo_ellipse_torsionless_pcs(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only PCS data). |
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test_cam_pseudo_ellipse_torsionless_rdc(self)
Test the second isotropic cone, free rotor frame order model of CaM
(with only RDC data). |
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test_cam_rigid(self)
Test the rigid frame order model of CaM. |
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test_cam_rigid_pcs(self)
Test the rigid frame order model of CaM (with only PCS data). |
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test_cam_rigid_rdc(self)
Test the rigid frame order model of CaM (with only RDC data). |
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test_cam_rotor(self)
Test the rotor frame order model of CaM. |
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test_cam_rotor_pcs(self)
Test the rotor frame order model of CaM (with only PCS data). |
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test_cam_rotor_rdc(self)
Test the rotor frame order model of CaM (with only RDC data). |
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test_cam_rotor_2_state(self)
Test the 2-state rotor frame order model of CaM. |
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test_cam_rotor_2_state_pcs(self)
Test the 2-state rotor frame order model of CaM (with only PCS data). |
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test_cam_rotor_2_state_rdc(self)
Test the 2-state rotor frame order model of CaM (with only RDC data). |
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test_cam_rotor2(self)
Test the second rotor frame order model of CaM. |
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test_cam_rotor2_pcs(self)
Test the second rotor frame order model of CaM (with only PCS data). |
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test_cam_rotor2_rdc(self)
Test the second rotor frame order model of CaM (with only RDC data). |
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test_generate_rotor2_distribution(self)
Generate the rotor2 distribution of CaM. |
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fixme_test_model_free_rotor(self)
Test the free rotor frame order model. |
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fixme_test_model_free_rotor_eigenframe(self)
Test the free rotor frame order model in the eigenframe. |
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fixme_test_model_iso_cone(self)
Test the isotropic cone frame order model. |
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fixme_test_model_iso_cone_free_rotor(self)
Test the free rotor isotropic cone frame order model. |
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fixme_test_model_iso_cone_free_rotor_eigenframe(self)
Test the free rotor isotropic cone frame order model in the
eigenframe. |
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fixme_test_model_pseudo_ellipse(self)
Test the pseudo-ellipse frame order model. |
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fixme_test_model_pseudo_ellipse_free_rotor(self)
Test the free rotor pseudo-elliptic cone frame order model. |
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fixme_test_model_pseudo_ellipse_torsionless(self)
Test the pseudo-ellipse frame order model. |
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fixme_test_model_rotor(self)
Test the rotor frame order model. |
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fixme_test_model_rotor_eigenframe(self)
Test the rotor frame order model in the eigenframe. |
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fixme_test_opendx_map(self)
Test the mapping of the Euler angle parameters for OpenDx viewing. |
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fixme_test_opt_rigid_no_rot(self)
Test the 'rigid' model for unrotated tensors with no motion. |
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fixme_test_opt_rigid_rand_rot(self)
Test the 'rigid' model for randomly rotated tensors with no motion. |
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fixme_test_parametric_restriction_iso_cone_to_iso_cone_free_rotor(self)
Parametric restriction of the isotropic cone to the free rotor
isotropic cone frame order model. |
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fixme_test_parametric_restriction_pseudo_ellipse_to_iso_cone(self)
Parametric restriction of the pseudo-ellipse to the isotropic cone
frame order model. |
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fixme_test_parametric_restriction_pseudo_ellipse_to_iso_cone_free_rotor(self)
Parametric restriction of the pseudo-ellipse to the free rotor
isotropic cone frame order model. |
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fixme_test_parametric_restriction_pseudo_ellipse_free_rotor_to_iso_cone(self)
Parametric restriction of the pseudo-ellipse to the isotropic cone
frame order model. |
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fixme_test_parametric_restriction_pseudo_ellipse_free_rotor_to_iso_cone_free_rotor(self)
Parametric restriction of the free rotor pseudo-ellipse to the free
rotor isotropic cone frame order model. |
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fixme_test_pseudo_ellipse(self)
Test the pseudo-ellipse target function. |
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fixme_test_pseudo_ellipse_torsionless(self)
Test the torsionless pseudo-ellipse target function. |
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test_rigid_data_to_free_rotor_model(self)
Test the free rotor target function for the data from a rigid test
molecule. |
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test_rigid_data_to_iso_cone_model(self)
Test the iso cone target function for the data from a rigid test
molecule. |
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test_rigid_data_to_iso_cone_free_rotor_model(self)
Test the iso cone, free rotor target function for the data from a
rigid test molecule. |
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test_rigid_data_to_iso_cone_torsionless_model(self)
Test the iso cone, torsionless target function for the data from a
rigid test molecule. |
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test_rigid_data_to_rigid_model(self)
Test the rigid target function for the data from a rigid test
molecule. |
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test_rigid_data_to_rotor_model(self)
Test the rotor target function for the data from a rigid test
molecule. |
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test_rigid_data_to_pseudo_ellipse_model(self)
Test the pseudo-ellipse target function for the data from a rigid
test molecule. |
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test_rigid_data_to_pseudo_ellipse_torsionless_model(self)
Test the pseudo-ellipse, torsionless target function for the data
from a rigid test molecule. |
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Inherited from base_classes.SystemTestCase :
script_exec
Inherited from unittest.case.TestCase :
__call__ ,
__eq__ ,
__hash__ ,
__ne__ ,
__repr__ ,
__str__ ,
addCleanup ,
addTypeEqualityFunc ,
assertAlmostEqual ,
assertAlmostEquals ,
assertDictContainsSubset ,
assertDictEqual ,
assertEqual ,
assertEquals ,
assertFalse ,
assertGreater ,
assertGreaterEqual ,
assertIn ,
assertIs ,
assertIsInstance ,
assertIsNone ,
assertIsNot ,
assertIsNotNone ,
assertItemsEqual ,
assertLess ,
assertLessEqual ,
assertListEqual ,
assertMultiLineEqual ,
assertNotAlmostEqual ,
assertNotAlmostEquals ,
assertNotEqual ,
assertNotEquals ,
assertNotIn ,
assertNotIsInstance ,
assertNotRegexpMatches ,
assertRaises ,
assertRaisesRegexp ,
assertRegexpMatches ,
assertSequenceEqual ,
assertSetEqual ,
assertTrue ,
assertTupleEqual ,
assert_ ,
countTestCases ,
debug ,
defaultTestResult ,
doCleanups ,
fail ,
failIf ,
failIfAlmostEqual ,
failIfEqual ,
failUnless ,
failUnlessAlmostEqual ,
failUnlessEqual ,
failUnlessRaises ,
id ,
run ,
shortDescription ,
skipTest
Inherited from unittest.case.TestCase (private):
_addSkip ,
_baseAssertEqual ,
_deprecate ,
_formatMessage ,
_getAssertEqualityFunc ,
_truncateMessage
Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__setattr__ ,
__sizeof__ ,
__subclasshook__
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