Package user_functions :: Module results
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Source Code for Module user_functions.results

  1  ############################################################################### 
  2  #                                                                             # 
  3  # Copyright (C) 2003-2014 Edward d'Auvergne                                   # 
  4  #                                                                             # 
  5  # This file is part of the program relax (http://www.nmr-relax.com).          # 
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 12  # This program is distributed in the hope that it will be useful,             # 
 13  # but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
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 15  # GNU General Public License for more details.                                # 
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 18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.       # 
 19  #                                                                             # 
 20  ############################################################################### 
 21   
 22  # Module docstring. 
 23  """The results user function definitions.""" 
 24   
 25  # Python module imports. 
 26  import dep_check 
 27  if dep_check.wx_module: 
 28      from wx import FD_OPEN, FD_SAVE 
 29  else: 
 30      FD_OPEN = -1 
 31      FD_SAVE = -1 
 32   
 33  # relax module imports. 
 34  from pipe_control import results 
 35  from user_functions.data import Uf_info; uf_info = Uf_info() 
 36  from user_functions.objects import Desc_container 
 37  from user_functions.wildcards import WILDCARD_RELAX_RESULT 
 38   
 39   
 40  # The user function class. 
 41  uf_class = uf_info.add_class('results') 
 42  uf_class.title = "Class for manipulating results." 
 43  uf_class.menu_text = "&results" 
 44  uf_class.gui_icon = "relax.relax" 
 45   
 46   
 47  # The results.display user function. 
 48  uf = uf_info.add_uf('results.display') 
 49  uf.title = "Display the results." 
 50  uf.title_short = "Results display." 
 51  uf.display = True 
 52  # Description. 
 53  uf.desc.append(Desc_container()) 
 54  uf.desc[-1].add_paragraph("This will print to screen (STDOUT) the results contained within the current data pipe.") 
 55  uf.backend = results.display 
 56  uf.menu_text = "&display" 
 57  uf.gui_icon = "oxygen.actions.document-preview" 
 58  uf.wizard_size = (600, 300) 
 59  uf.wizard_apply_button = False 
 60   
 61   
 62  # The results.read user function. 
 63  uf = uf_info.add_uf('results.read') 
 64  uf.title = "Read the contents of a relax results file into the relax data store." 
 65  uf.title_short = "Results reading." 
 66  uf.add_keyarg( 
 67      name = "file", 
 68      default = "results", 
 69      py_type = "str", 
 70      arg_type = "file sel", 
 71      desc_short = "file name", 
 72      desc = "The name of the file to read results from.", 
 73      wiz_filesel_wildcard = WILDCARD_RELAX_RESULT, 
 74      wiz_filesel_style = FD_OPEN, 
 75      wiz_filesel_preview = False 
 76  ) 
 77  uf.add_keyarg( 
 78      name = "dir", 
 79      py_type = "str", 
 80      arg_type = "dir", 
 81      desc_short = "directory name", 
 82      desc = "The directory where the file is located.", 
 83      can_be_none = True 
 84  ) 
 85  # Description. 
 86  uf.desc.append(Desc_container()) 
 87  uf.desc[-1].add_paragraph("This is able to handle uncompressed, bzip2 compressed files, or gzip compressed files automatically.  The full file name including extension can be supplied, however, if the file cannot be found the file with '.bz2' appended followed by the file name with '.gz' appended will be searched for.") 
 88  uf.backend = results.read 
 89  uf.menu_text = "&read" 
 90  uf.gui_icon = "oxygen.actions.document-open" 
 91  uf.wizard_size = (700, 500) 
 92  uf.wizard_apply_button = False 
 93   
 94   
 95  # The results.write user function. 
 96  uf = uf_info.add_uf('results.write') 
 97  uf.title = "Write the results to a file." 
 98  uf.title_short = "Results writing." 
 99  uf.add_keyarg( 
100      name = "file", 
101      default = "results", 
102      py_type = "str_or_inst", 
103      arg_type = "file sel", 
104      desc_short = "file name", 
105      desc = "The name of the file to output results to.  The default is 'results'.  Optionally this can be a file object, or any object with a write() method.", 
106      wiz_filesel_wildcard = WILDCARD_RELAX_RESULT, 
107      wiz_filesel_style = FD_SAVE 
108  ) 
109  uf.add_keyarg( 
110      name = "dir", 
111      default = "pipe_name", 
112      py_type = "str", 
113      arg_type = "dir", 
114      desc_short = "directory name", 
115      desc = "The directory name.", 
116      can_be_none = True 
117  ) 
118  uf.add_keyarg( 
119      name = "compress_type", 
120      default = 1, 
121      py_type = "int", 
122      desc_short = "compression type", 
123      desc = "The type of compression to use when creating the file.", 
124      wiz_element_type = "combo", 
125      wiz_combo_choices = [ 
126          "No compression", 
127          "bzip2 compression", 
128          "gzip compression" 
129      ], 
130      wiz_combo_data = [ 
131          0, 
132          1, 
133          2 
134      ], 
135      wiz_read_only = True, 
136  ) 
137  uf.add_keyarg( 
138      name = "force", 
139      default = False, 
140      py_type = "bool", 
141      desc_short = "force flag", 
142      desc = "A flag which if True will cause the results file to be overwritten." 
143  ) 
144  # Description. 
145  uf.desc.append(Desc_container()) 
146  uf.desc[-1].add_paragraph("This will write the entire contents of the current data pipe into an XML formatted file.  This results file can then be read back into relax at a later point in time, or transfered to another machine.  This is in contrast to the state.save user function whereby the entire data store, including all data pipes, are saved into a similarly XML formatted file.") 
147  uf.desc[-1].add_paragraph("To place the results file in the current working directory in the prompt and scripting modes, leave the directory unset.  If the directory is set to the special name 'pipe_name', then the results file will be placed into a directory with the same name as the current data pipe.") 
148  uf.desc[-1].add_paragraph("The default behaviour of this function is to compress the file using bzip2 compression.  If the extension '.bz2' is not included in the file name, it will be added.  The compression can, however, be changed to either no compression or gzip compression.  This is controlled by the compression type which can be set to") 
149  uf.desc[-1].add_item_list_element("0", "No compression (no file extension),") 
150  uf.desc[-1].add_item_list_element("1", "bzip2 compression ('.bz2' file extension),") 
151  uf.desc[-1].add_item_list_element("2", "gzip compression ('.gz' file extension).") 
152  uf.desc[-1].add_paragraph("The complementary read function will automatically handle the compressed files.") 
153  uf.backend = results.write 
154  uf.menu_text = "&write" 
155  uf.gui_icon = "oxygen.actions.document-save" 
156  uf.wizard_height_desc = 450 
157  uf.wizard_size = (1000, 750) 
158  uf.wizard_apply_button = False 
159