Class for testing various aspects specific to the diffusion
tensor.
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setUp(self)
Function for initialising a spherical, spheroidal, and ellipsoidal
diffusion tensor. |
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check_ellipsoid(self,
Dx,
Dy,
Dz,
Diso,
Da,
Dr,
alpha,
beta,
gamma,
D,
D_prime,
R)
Check if the ellipsoid in the cdp has the same values as given. |
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check_spheroid(self,
tm,
Dpar,
Dper,
Diso,
Da,
Dratio,
theta,
phi,
D,
D_prime,
R,
spheroid_type=None)
Check if the spheroid in the cdp has the same values as given. |
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check_spheroid_as_ellipsoid(self,
tm,
Dx,
Dy,
Dz,
Diso,
Da,
D,
D_prime,
R)
Check if the ellipsoid in the cdp has the same values as given
spheroid. |
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get_ellipsoid(self)
Return all the diffusion tensor info about the {Dx, Dy, Dz, alpha,
beta, gamma} = {1e7, 2e7, 3e7, 1, 2, 0.5} ellipsoid tensor. |
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get_spheroid(self,
Dpar=None,
Dper=None,
theta=None,
phi=None)
Return all the diffusion tensor info about the given spheroid tensor. |
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test_back_calc_ellipsoid(self)
Check the back-calculation of relaxation data for the spherical
diffusion tensor. |
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test_back_calc_sphere(self)
Check the back-calculation of relaxation data for the spherical
diffusion tensor. |
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test_back_calc_spheroid(self)
Check the back-calculation of relaxation data for the spherical
diffusion tensor. |
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test_bug_21561_tensor_pdb_failure(self)
Catch bug
#21561 reported by Martin Ballaschk, the failure of the diffusion
tensor PDB creation when Monte Carlo simulations are not present. |
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test_copy(self)
The user function diffusion_tensor.copy(). |
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test_delete(self)
The user function diffusion_tensor.delete(). |
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test_display(self)
The user function diffusion_tensor.display(). |
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test_create_diff_tensor_pdb_ellipsoid(self)
Test the user function structure.create_diff_tensor_pdb() for the
ellipsoid. |
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test_create_diff_tensor_pdb_sphere(self)
Test the user function structure.create_diff_tensor_pdb() for the
sphere. |
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test_create_diff_tensor_pdb_spheroid(self)
Test the user function structure.create_diff_tensor_pdb() for the
spheroid. |
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test_init_ellipsoid_param_types_0(self)
Test the initialisation of the ellipsoid diffusion tensor using
parameter set 0. |
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test_init_ellipsoid_param_types_1(self)
Test the initialisation of the ellipsoid diffusion tensor using
parameter set 0. |
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test_init_ellipsoid_param_types_2(self)
Test the initialisation of the ellipsoid diffusion tensor using
parameter set 0. |
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test_init_ellipsoid_param_types_3(self)
Test the initialisation of the ellipsoid diffusion tensor using
parameter set 0. |
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test_init_oblate_spheroid_as_ellipsoid(self)
Test the initialisation of the spheroid diffusion tensor using
parameter set 4. |
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test_init_oblate_spheroid_param_types_0(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 0. |
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test_init_oblate_spheroid_param_types_1(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 1. |
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test_init_oblate_spheroid_param_types_1_deg(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 1, and angles in deg. |
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test_init_oblate_spheroid_param_types_2(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 2. |
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test_init_oblate_spheroid_param_types_3(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 3. |
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test_init_oblate_spheroid_param_types_4(self)
Test the initialisation of the oblate spheroid diffusion tensor using
parameter set 4. |
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test_init_prolate_spheroid_as_ellipsoid(self)
Test the initialisation of the spheroid diffusion tensor using
parameter set 4. |
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test_init_prolate_spheroid_param_types_0(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 0. |
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test_init_prolate_spheroid_param_types_0b(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 0. |
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test_init_prolate_spheroid_param_types_1(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 1. |
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test_init_prolate_spheroid_param_types_1_deg(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 1, and angles in deg. |
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test_init_prolate_spheroid_param_types_2(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 2. |
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test_init_prolate_spheroid_param_types_3(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 3. |
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test_init_prolate_spheroid_param_types_4(self)
Test the initialisation of the prolate spheroid diffusion tensor
using parameter set 4. |
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test_opt_ellipsoid(self)
Check that the ellipsoid diffusion tensor optimisation functions
correctly. |
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test_opt_sphere(self)
Check that the sphere diffusion tensor optimisation functions
correctly. |
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test_opt_spheroid(self)
Check that the spheroid diffusion tensor optimisation functions
correctly. |
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Inherited from base_classes.SystemTestCase:
__init__,
script_exec
Inherited from unittest.case.TestCase:
__call__,
__eq__,
__hash__,
__ne__,
__repr__,
__str__,
addCleanup,
addTypeEqualityFunc,
assertAlmostEqual,
assertAlmostEquals,
assertDictContainsSubset,
assertDictEqual,
assertEqual,
assertEquals,
assertFalse,
assertGreater,
assertGreaterEqual,
assertIn,
assertIs,
assertIsInstance,
assertIsNone,
assertIsNot,
assertIsNotNone,
assertItemsEqual,
assertLess,
assertLessEqual,
assertListEqual,
assertMultiLineEqual,
assertNotAlmostEqual,
assertNotAlmostEquals,
assertNotEqual,
assertNotEquals,
assertNotIn,
assertNotIsInstance,
assertNotRegexpMatches,
assertRaises,
assertRaisesRegexp,
assertRegexpMatches,
assertSequenceEqual,
assertSetEqual,
assertTrue,
assertTupleEqual,
assert_,
countTestCases,
debug,
defaultTestResult,
doCleanups,
fail,
failIf,
failIfAlmostEqual,
failIfEqual,
failUnless,
failUnlessAlmostEqual,
failUnlessEqual,
failUnlessRaises,
id,
run,
shortDescription,
skipTest
Inherited from unittest.case.TestCase (private):
_addSkip,
_baseAssertEqual,
_deprecate,
_formatMessage,
_getAssertEqualityFunc,
_truncateMessage
Inherited from object:
__delattr__,
__format__,
__getattribute__,
__new__,
__reduce__,
__reduce_ex__,
__setattr__,
__sizeof__,
__subclasshook__
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