Package bmrblib :: Package assembly_supercategory :: Module entity_v2_1
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Source Code for Module bmrblib.assembly_supercategory.entity_v2_1

 1  ############################################################################# 
 2  #                                                                           # 
 3  # The BMRB library.                                                         # 
 4  #                                                                           # 
 5  # Copyright (C) 2009-2013 Edward d'Auvergne                                 # 
 6  #                                                                           # 
 7  # This program is free software: you can redistribute it and/or modify      # 
 8  # it under the terms of the GNU General Public License as published by      # 
 9  # the Free Software Foundation, either version 3 of the License, or         # 
10  # (at your option) any later version.                                       # 
11  #                                                                           # 
12  # This program is distributed in the hope that it will be useful,           # 
13  # but WITHOUT ANY WARRANTY; without even the implied warranty of            # 
14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the             # 
15  # GNU General Public License for more details.                              # 
16  #                                                                           # 
17  # You should have received a copy of the GNU General Public License         # 
18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.     # 
19  #                                                                           # 
20  ############################################################################# 
21   
22  # Module docstring. 
23  """The v2.1 entity saveframe category. 
24   
25  This file is part of the U{BMRB library<https://gna.org/projects/bmrblib>}. 
26   
27  See http://www.bmrb.wisc.edu/dictionary/htmldocs/nmr_star/dictionary_files/complete_form_v21.txt. 
28  """ 
29   
30  # relax module imports. 
31  from bmrblib.assembly_supercategory.entity import EntitySaveframe, Entity, EntityCompIndex 
32   
33   
34 -class EntitySaveframe_v2_1(EntitySaveframe):
35 """The v2.1 entity saveframe class.""" 36 37 # Class variables. 38 sf_label = 'monomeric_polymer' 39
40 - def add_tag_categories(self):
41 """Create the v2.1 tag categories.""" 42 43 # The tag category objects. 44 self.tag_categories.append(Entity_v2_1(self)) 45 self.tag_categories.append(EntityCompIndex_v2_1(self))
46 47 48
49 -class Entity_v2_1(Entity):
50 """v2.1 Entity tag category.""" 51
52 - def __init__(self, sf):
53 """Setup the Entity tag category. 54 55 @param sf: The saveframe object. 56 @type sf: saveframe instance 57 """ 58 59 # Initialise the baseclass. 60 super(Entity_v2_1, self).__init__(sf) 61 62 # Change tag names. 63 self['SfCategory'].tag_name = 'Saveframe_category' 64 self['Name'].tag_name = 'Name_common' 65 self['Type'].tag_name = 'Mol_type' 66 self['PolymerType'].tag_name = 'Mol_polymer_class' 67 self['ThiolState'].tag_name = 'Mol_thiol_state' 68 self['PolymerSeqOneLetterCode'].tag_name = 'Mol_residue_sequence' 69 self['FormulaWeight'].tag_name = 'Molecular_mass' 70 self['DBQueryDate'].tag_name = 'Sequence_homology_query_date' 71 self['DBQueryRevisedLastDate'].tag_name = 'Sequence_homology_query_revised_last_date'
72 73 74
75 -class EntityCompIndex_v2_1(EntityCompIndex):
76 """v2.1 EntityCompIndex tag category.""" 77
78 - def __init__(self, sf):
79 """Setup the EntityCompIndex_v2_1 tag category. 80 81 @param sf: The saveframe object. 82 @type sf: saveframe instance 83 """ 84 85 # Initialise the baseclass. 86 super(EntityCompIndex_v2_1, self).__init__(sf) 87 88 # Change tag names. 89 self['EntityCompIndexID'].tag_name = 'Residue_seq_code' 90 self['CompID'].tag_name = 'Residue_label'
91