r8168 - /branches/ave_noe/test_suite/system_tests/noe_restraints.py -- December 09, 2008 - 10:45

Author: bugman
Date: Tue Dec  9 10:45:58 2008
New Revision: 8168

URL: http://svn.gna.org/viewcvs/relax?rev=8168&view=rev
Log:
Added the system test framework for NOE restraint reading tests.

This includes one test for the reading of RNA H-bond restraints from an Xplor 
formatted input file.


Added:
    branches/ave_noe/test_suite/system_tests/noe_restraints.py

Added: branches/ave_noe/test_suite/system_tests/noe_restraints.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/ave_noe/test_suite/system_tests/noe_restraints.py?rev=8168&view=auto
==============================================================================
--- branches/ave_noe/test_suite/system_tests/noe_restraints.py (added)
+++ branches/ave_noe/test_suite/system_tests/noe_restraints.py Tue Dec  9 
10:45:58 2008
@@ -1,0 +1,51 @@
+###############################################################################
+#                                                                            
 #
+# Copyright (C) 2008 Edward d'Auvergne                                       
 #
+#                                                                            
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+# This file is part of the program relax.                                    
 #
+#                                                                            
 #
+# relax is free software; you can redistribute it and/or modify              
 #
+# it under the terms of the GNU General Public License as published by       
 #
+# the Free Software Foundation; either version 2 of the License, or          
 #
+# (at your option) any later version.                                        
 #
+#                                                                            
 #
+# relax is distributed in the hope that it will be useful,                   
 #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of             
 #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the              
 #
+# GNU General Public License for more details.                               
 #
+#                                                                            
 #
+# You should have received a copy of the GNU General Public License          
 #
+# along with relax; if not, write to the Free Software                       
 #
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA  
 #
+#                                                                            
 #
+###############################################################################
+
+# Python module imports.
+import sys
+from unittest import TestCase
+
+# relax module imports.
+from data import Relax_data_store; ds = Relax_data_store()
+
+
+class Noe_restraints(TestCase):
+    """Class for testing various aspects specific to NOE restraints."""
+
+    def setUp(self):
+        """Set up for all the functional tests."""
+
+        # Create the data pipe.
+        self.relax.interpreter._Pipe.create('test', 'N-state')
+
+
+    def tearDown(self):
+        """Reset the relax data storage object."""
+
+        ds.__reset__()
+
+
+    def test_read_xplor_rna(self):
+        """Test the reading of RNA H-bond restraints in Xplor format."""
+
+        # Read the Xplor input file.
+        self.relax.interpreter._Noe.read_restraints(file=noe_rna_hbond.dat, 
dir=sys.path[-1] + '/test_suite/shared_data/noe_restraints')