URL: <http://gna.org/bugs/?8997> Summary: bug in palmer.py stage 2 Project: relax Submitted by: None Submitted on: Wednesday 04/25/2007 at 12:36 CEST Category: relax's source code Severity: 3 - Normal Priority: 5 - Normal Status: None Privacy: Public Assigned to: None Originator Name: Carl Diehl Originator Email: carl.diehl@xxxxxxxxx Open/Closed: Open Discussion Lock: Any Release: 1.2.10 Operating System: GNU/Linux _______________________________________________________ Details: Encountered a bug while running palmer.py with stage=2, stage=1 worked fine. The only modifications was correcting for my system. nuclei(heteronuc='N') relax> state.load(file='stage1.save', dir=None) Opening the file 'stage1.save' for reading. Loading all the Modelfree 4 data. relax> palmer.extract(run='m1', dir=None) Traceback (most recent call last): File "/home/matsl/carl/apps/relax-1.2.10//relax", line 454, in ? Relax() File "/home/matsl/carl/apps/relax-1.2.10//relax", line 166, in __init__ self.interpreter.run() File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 213, in run run_script(intro=self.relax.intro_string, local=self.local, script_file=self.relax.script_file, quit=1) File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 388, in run_script console.interact(intro, local, script_file, quit) File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 340, in interact_script execfile(script_file, local) File "palmer.py", line 129, in ? exec_stage_2(runs) File "palmer.py", line 69, in exec_stage_2 palmer.extract(run=name) File "/home/matsl/carl/apps/relax-1.2.10/prompt/palmer.py", line 263, in extract self.__relax__.generic.palmer.extract(run=run, dir=dir) File "/home/matsl/carl/apps/relax-1.2.10/generic_fns/palmer.py", line 578, in extract data.chi2 = float(row[1]) IndexError: list index out of range _______________________________________________________ File Attachments: ------------------------------------------------------- Date: Wednesday 04/25/2007 at 12:36 CEST Name: palmer.py Size: 4kB By: None <http://gna.org/bugs/download.php?file_id=2270> ------------------------------------------------------- Date: Wednesday 04/25/2007 at 12:36 CEST Name: stage1.save.bz2 Size: 3kB By: None <http://gna.org/bugs/download.php?file_id=2271> _______________________________________________________ Reply to this item at: <http://gna.org/bugs/?8997> _______________________________________________ Message sent via/by Gna! http://gna.org/