URL: <http://gna.org/bugs/?10320> Summary: bug in model-free.py; All residues must either have a local tm parameter or not Project: relax Submitted by: None Submitted on: Tuesday 11/13/2007 at 17:57 CET Category: relax's source code Severity: 3 - Normal Priority: 5 - Normal Status: None Privacy: Public Assigned to: None Originator Name: doug Originator Email: Open/Closed: Open Discussion Lock: Any Release: Repository: 1.2 line Operating System: None _______________________________________________________ Details: SVN 3357 I have encountered the following bug (https://mail.gna.org/public/relax-users/2007-10/msg00028.html) when running the full_analysis.py script, which seems to involve the model-free.py file. I've attached a save state file before (relax_state_before_eliminate.bz2) and after (relax_state_20072910_155552.bz2) the error. FYI: there was difficultly in the optimization of the oblate tensor for these data, so I stopped the optimization and used the last calculation; this should not affect the error reported above, as this error has been reproduced on a few other datasets. relax> state.save(file='relax_state_20072910_155552', dir=None, force=0, compress_type=1) Opening the file 'relax_state_20072910_155552.bz2' for writing. Traceback (most recent call last): File "full_analysis.py", line 581, in ? Main(self.relax) File "full_analysis.py", line 296, in __init__ self.model_selection(run='final', write_flag=0) File "full_analysis.py", line 517, in model_selection eliminate() File "/opt/relax/1.2/prompt/eliminate.py", line 97, in eliminate self.relax.generic.eliminate.eliminate(run=run, function=function, args=args) File "/opt/relax/1.2/generic_fns/eliminate.py", line 56, in eliminate for i in xrange(num_instances(self.run)): File "/opt/relax/1.2/specific_fns/model_free.py", line 2595, in num_instances self.param_set = self.determine_param_set_type() File "/opt/relax/1.2/specific_fns/model_free.py", line 1035, in determine_param_set_type raise RelaxError, "All residues must either have a local tm parameter or not." RelaxError: RelaxError: All residues must either have a local tm parameter or not. _______________________________________________________ File Attachments: ------------------------------------------------------- Date: Tuesday 11/13/2007 at 17:57 CET Name: relax_state_before_eliminate.bz2 Size: 56kB By: None <http://gna.org/bugs/download.php?file_id=3198> ------------------------------------------------------- Date: Tuesday 11/13/2007 at 17:57 CET Name: relax_state_20072910_155552.bz2 Size: 56kB By: None <http://gna.org/bugs/download.php?file_id=3199> _______________________________________________________ Reply to this item at: <http://gna.org/bugs/?10320> _______________________________________________ Message sent via/by Gna! http://gna.org/