Trees
Indices
Help
relax
[
hide private
]
[
frames
] |
no frames
]
Identifier Index
[
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V W X Y
Z
_
]
A
abs
(in
minimise.scipy_optimize
)
approx_fprime()
(in
minimise.scipy_optimize
)
asymptotic
(in
model_selection
)
anova_tests()
(in
palmer
)
ask_stage()
(in
model_free
)
asymptotic
(in
model_selection.asymptotic
)
approx_fhess_p()
(in
minimise.scipy_optimize
)
ask_stage()
(in
palmer
)
B
backtrack
(in
minimise.line_search
)
backup_current_data()
(in
levenberg_marquardt
)
bootstrap
(in
model_selection
)
backtrack()
(in
minimise.line_search.backtrack
)
backup_current_data()
(in
newton
)
bootstrap
(in
model_selection.bootstrap
)
backup_current_data()
(in
bfgs
)
backup_current_data()
(in
steepest_descent
)
bracket()
(in
minimise.scipy_optimize
)
backup_current_data()
(in
cauchy_point
)
bfgs
(in
minimise
)
brent()
(in
minimise.scipy_optimize
)
backup_current_data()
(in
coordinate_descent
)
bfgs
(in
minimise.bfgs
)
C
calc_constants()
(in
data
)
calc_djw_dS2s_iso_m5()
(in
dJw
)
common_operations
(in
model_selection.common_ops
)
calc_d2jw_dae2_iso_m24()
(in
d2Jw
)
calc_djw_dte_iso_m24()
(in
dJw
)
common_ops
calc_d2jw_das2_iso_m5()
(in
d2Jw
)
calc_djw_dts_iso_m5()
(in
dJw
)
common_ops
(in
common_ops
)
calc_d2jw_dS2dae_iso_m24()
(in
d2Jw
)
calc_frq()
(in
data
)
common_ops
(in
model_selection
)
calc_d2jw_dS2dte_iso_m24()
(in
d2Jw
)
calc_jw_iso_m13()
(in
Jw
)
contract()
(in
simplex
)
calc_d2jw_dS2fdas_iso_m5()
(in
d2Jw
)
calc_jw_iso_m13()
(in
Jw
)
contract_orig()
(in
simplex
)
calc_d2jw_dS2fdS2s_iso_m5()
(in
d2Jw
)
calc_jw_iso_m13()
(in
Jw
)
coordinate_descent
(in
minimise
)
calc_d2jw_dS2fdS2s_iso_m5()
(in
d2Jw
)
calc_jw_iso_m24()
(in
Jw
)
coordinate_descent
(in
minimise.coordinate_descent
)
calc_d2jw_dS2fdts_iso_m5()
(in
d2Jw
)
calc_jw_iso_m24()
(in
Jw
)
create_list()
(in
tab_completion
)
calc_d2jw_dS2sdas_iso_m5()
(in
d2Jw
)
calc_jw_iso_m24()
(in
Jw
)
create_lm_matrix()
(in
levenberg_marquardt
)
calc_d2jw_dS2sdts_iso_m5()
(in
d2Jw
)
calc_jw_iso_m5()
(in
Jw
)
create_mfdata()
(in
palmer
)
calc_d2jw_dte2_iso_m24()
(in
d2Jw
)
calc_jw_iso_m5()
(in
Jw
)
create_mfin()
(in
palmer
)
calc_d2jw_dts2_iso_m5()
(in
d2Jw
)
calc_jw_iso_m5()
(in
Jw
)
create_mfmodel()
(in
palmer
)
calc_djw_dae_iso_m24()
(in
dJw
)
calc_pk()
(in
cauchy_point
)
create_mfpar()
(in
palmer
)
calc_djw_das_iso_m5()
(in
dJw
)
calc_rho()
(in
generic_trust_region
)
create_run()
(in
palmer
)
calc_djw_dS2_iso_m13()
(in
dJw
)
calc_rho()
(in
minimise.trust_region
)
create_simplex()
(in
simplex
)
calc_djw_dS2_iso_m13()
(in
dJw
)
cauchy_point
(in
minimise
)
create_sublist()
(in
tab_completion
)
calc_djw_dS2_iso_m24()
(in
dJw
)
cauchy_point
(in
minimise.cauchy_point
)
cross_validation
(in
model_selection
)
calc_djw_dS2_iso_m24()
(in
dJw
)
chi2
(in
functions
)
cubic_ext()
(in
minimise.line_search.interpolate
)
calc_djw_dS2f_iso_m5()
(in
dJw
)
chi2
(in
functions.chi2
)
cubic_int()
(in
minimise.line_search.interpolate
)
calc_djw_dS2f_iso_m5()
(in
dJw
)
chi2()
(in
chi2
)
curvefit_input()
(in
relax_fit
)
calc_djw_dS2s_iso_m5()
(in
dJw
)
close_mf_files()
(in
palmer
)
cv
(in
model_selection.cross_validation
)
D
d2chi2
(in
functions
)
d2Ri_prime()
(in
d2Ri_prime
)
dJw
(in
functions.djw_mf
)
d2chi2
(in
functions.d2chi2
)
data
dJw
(in
functions.djw_mf_trans
)
d2chi2()
(in
d2chi2
)
data
(in
data
)
dJw
(in
functions.djw_srls
)
d2Jw
(in
functions.d2jw_mf
)
data
(in
functions
)
dJw()
(in
dJw
)
d2Jw
(in
functions.d2jw_mf_trans
)
data
(in
functions.data
)
dJw()
(in
dJw
)
d2Jw
(in
functions.d2jw_srls
)
dchi2
(in
functions
)
dJw()
(in
dJw
)
d2Jw()
(in
d2Jw
)
dchi2
(in
functions.dchi2
)
djw_mf
(in
functions
)
d2Jw()
(in
d2Jw
)
dchi2()
(in
dchi2
)
djw_mf_trans
(in
functions
)
d2Jw()
(in
d2Jw
)
default_data()
(in
mfin_data
)
djw_srls
(in
functions
)
d2jw_mf
(in
functions
)
dfunc1()
(in
minimise.line_search.test_functions
)
dri
(in
functions
)
d2jw_mf_trans
(in
functions
)
dfunc2()
(in
minimise.line_search.test_functions
)
dRi
(in
functions.dri
)
d2jw_srls
(in
functions
)
dfunc3()
(in
minimise.line_search.test_functions
)
dRi()
(in
dRi
)
d2ri
(in
functions
)
dfunc456()
(in
minimise.line_search.test_functions
)
dri_prime
(in
functions
)
d2Ri
(in
functions.d2ri
)
dir()
(in
bfgs
)
dRi_prime
(in
functions.dri_prime
)
d2Ri()
(in
d2Ri
)
dir()
(in
coordinate_descent
)
dRi_prime()
(in
dRi_prime
)
d2ri_prime
(in
functions
)
dir()
(in
newton
)
d2Ri_prime
(in
functions.d2ri_prime
)
dir()
(in
steepest_descent
)
E
epsilon
(in
minimise.scipy_optimize
)
exp_overall_disc
(in
model_selection.exp_overall_disc
)
extract_mf_data()
(in
cv
)
exit()
(in
macros
)
extend()
(in
simplex
)
extract_mf_data()
(in
palmer
)
exp_overall_disc
(in
model_selection
)
extract()
(in
star
)
extract_relax_data()
(in
common_ops
)
F
farrow
(in
model_selection
)
final_run()
(in
palmer
)
func1()
(in
minimise.line_search.test_functions
)
farrow
(in
model_selection.farrow
)
finish()
(in
tab_completion
)
func2()
(in
minimise.line_search.test_functions
)
farrows_tests()
(in
farrow
)
fmin()
(in
minimise.scipy_optimize
)
func3()
(in
minimise.line_search.test_functions
)
file_ops
fmin_bfgs()
(in
minimise.scipy_optimize
)
func456()
(in
minimise.line_search.test_functions
)
file_ops
(in
file_ops
)
fmin_ncg()
(in
minimise.scipy_optimize
)
functions
fill_results()
(in
common_ops
)
fmin_powell()
(in
minimise.scipy_optimize
)
fill_results()
(in
cv
)
fminbound()
(in
minimise.scipy_optimize
)
G
generic_line_search
(in
minimise
)
get_chi2()
(in
star
)
golden()
(in
minimise.scipy_optimize
)
generic_line_search
(in
minimise.generic_line_search
)
get_class_members()
(in
tab_completion
)
goto_stage()
(in
palmer
)
generic_minimise
(in
minimise
)
get_ftest()
(in
star
)
grace
(in
minimise.line_search
)
generic_minimise
(in
minimise.generic_minimise
)
get_relax_values()
(in
star
)
grace()
(in
common_ops
)
generic_minimise()
(in
generic_minimise
)
get_rex()
(in
star
)
grace_header()
(in
common_ops
)
generic_trust_region
(in
minimise
)
get_s2()
(in
star
)
grid
(in
minimise
)
generic_trust_region
(in
minimise.generic_trust_region
)
get_s2f()
(in
star
)
grid()
(in
minimise.grid
)
get_a0()
(in
coordinate_descent
)
get_s2s()
(in
star
)
get_a0()
(in
steepest_descent
)
get_te()
(in
star
)
I
init_asymptotic
(in
data
)
init_grid_ops()
(in
model_free
)
initialise_jw_values()
(in
Jw
)
init_bootstrap
(in
data
)
init_log_file()
(in
file_ops
)
initialise_jw_values()
(in
Jw
)
init_constants()
(in
data
)
init_overall_disc
(in
data
)
input()
(in
usr_param
)
init_cv
(in
data
)
init_palmer
(in
data
)
interpolate
(in
minimise.line_search
)
init_data()
(in
data
)
init_param_types()
(in
mf_functions
)
interpreter
init_farrow
(in
data
)
init_param_types()
(in
mf_trans_functions
)
interpreter
(in
interpreter
)
init_fixed_params()
(in
model_free
)
init_param_types()
(in
srls_functions
)
J
Jw
(in
functions.jw_mf
)
Jw()
(in
Jw
)
jw_mf
(in
functions
)
Jw
(in
functions.jw_mf_trans
)
Jw()
(in
Jw
)
jw_mf_trans
(in
functions
)
Jw
(in
functions.jw_srls
)
Jw()
(in
Jw
)
jw_srls
(in
functions
)
L
levenberg_marquardt
(in
minimise
)
line_search_BFGS()
(in
minimise.scipy_optimize
)
log_input_info()
(in
common_ops
)
levenberg_marquardt
(in
minimise.levenberg_marquardt
)
lm_dri()
(in
mf_functions
)
log_params()
(in
common_ops
)
line_search
(in
minimise
)
lm_dri()
(in
mf_trans_functions
)
line_search()
(in
minimise.scipy_optimize
)
load()
(in
macros
)
M
macros
minimise
model_selection()
(in
cv
)
macros
(in
macros
)
minimise
(in
minimise
)
model_selection()
(in
exp_overall_disc
)
max
(in
minimise.scipy_optimize
)
minimise()
(in
minimise.minimise
)
model_selection()
(in
farrow
)
mf
(in
script-mf
)
mkdir()
(in
file_ops
)
model_selection()
(in
overall_disc
)
mf_functions
(in
functions
)
model_free
model_selection()
(in
palmer
)
mf_functions
(in
functions.mf_functions
)
model_free
(in
model_free
)
model_selection()
(in
usr_param
)
mf_trans_functions
(in
functions
)
model_selection
model_selection_extended()
(in
palmer
)
mf_trans_functions
(in
functions.mf_trans_functions
)
model_selection
(in
model_selection
)
model_selection_normal()
(in
palmer
)
mfin_data
(in
data
)
model_selection
(in
model_selection.model_selection
)
more_thuente
(in
minimise.line_search
)
min
(in
minimise.scipy_optimize
)
model_selection()
(in
model_free
)
more_thuente()
(in
minimise.line_search.more_thuente
)
minimisation()
(in
model_free
)
model_selection()
(in
bootstrap
)
N
new_param_func()
(in
generic_line_search
)
newton
(in
minimise
)
nocedal_wright_wolfe
(in
minimise.line_search
)
new_param_func()
(in
generic_trust_region
)
newton
(in
minimise.newton
)
nocedal_wright_wolfe()
(in
minimise.line_search.nocedal_wright_wolfe
)
new_param_func()
(in
levenberg_marquardt
)
nocedal_wright_interpol
(in
minimise.line_search
)
noscipy_flag
(in
minimise.minimise
)
new_param_func()
(in
simplex
)
nocedal_wright_interpol()
(in
minimise.line_search.nocedal_wright_interpol
)
Num
(in
minimise.scipy_optimize
)
O
open_file()
(in
file_ops
)
order_simplex()
(in
simplex
)
overall_disc
(in
model_selection.overall_disc
)
open_mf_files()
(in
palmer
)
overall_disc
(in
model_selection
)
P
palmer
(in
model_selection
)
palmer_run_param()
(in
usr_param
)
print_data()
(in
farrow
)
palmer
(in
model_selection.palmer
)
print_data()
(in
minimise.line_search.more_thuente
)
print_data()
(in
overall_disc
)
palmer
print_data()
(in
minimise.line_search.nocedal_wright_interpol
)
print_data()
(in
palmer
)
palmer
(in
palmer
)
print_data()
(in
minimise.line_search.nocedal_wright_wolfe
)
print_header()
(in
model_free
)
palmer_method_param()
(in
usr_param
)
print_data()
(in
asymptotic
)
print_results()
(in
common_ops
)
palmer_mfin_param()
(in
usr_param
)
print_data()
(in
bootstrap
)
print_results()
(in
model_free
)
palmer_mfmodel_param()
(in
usr_param
)
print_data()
(in
cv
)
print_results()
(in
cv
)
palmer_mfpar_param()
(in
usr_param
)
print_data()
(in
exp_overall_disc
)
Q
quadratic_fafbga()
(in
minimise.line_search.interpolate
)
quadratic_gagb()
(in
minimise.line_search.interpolate
)
R
read_file()
(in
file_ops
)
ri
(in
functions
)
rosen()
(in
minimise.scipy_optimize
)
reflect()
(in
simplex
)
Ri
(in
functions.ri
)
rosen_der()
(in
minimise.scipy_optimize
)
relax_data()
(in
file_ops
)
Ri()
(in
Ri
)
rosen_hess()
(in
minimise.scipy_optimize
)
relax_fit
ri_prime
(in
functions
)
rosen_hess_prod()
(in
minimise.scipy_optimize
)
relax_fit
(in
relax_fit
)
Ri_prime
(in
functions.ri_prime
)
run()
(in
minimise.line_search.test_functions
)
relax_params()
(in
usr_param
)
Ri_prime()
(in
Ri_prime
)
run()
(in
asymptotic
)
S
scipy_optimize
(in
minimise
)
shrink()
(in
simplex
)
stage_initial()
(in
palmer
)
script-mf
simplex
(in
minimise
)
stage_initial_cv()
(in
palmer
)
script-todo
simplex
(in
minimise.simplex
)
stage_selection()
(in
common_ops
)
set_intro_string()
(in
mf
)
split_rows()
(in
star
)
star
set_run_flags()
(in
palmer
)
srls_functions
(in
functions
)
star
(in
star
)
set_vars_stage_initial()
(in
palmer
)
srls_functions
(in
functions.srls_functions
)
steepest_descent
(in
minimise
)
set_vars_stage_selection()
(in
palmer
)
stage_final()
(in
palmer
)
steepest_descent
(in
minimise.steepest_descent
)
T
tab_completion
test_res_no()
(in
relax_fit
)
tests()
(in
simplex
)
tab_completion
(in
tab_completion
)
tests()
(in
generic_minimise
)
trust_region
(in
minimise
)
test_functions
(in
minimise.line_search
)
tests()
(in
levenberg_marquardt
)
trust_region()
(in
minimise.trust_region
)
U
update()
(in
minimise.line_search.more_thuente
)
update_data()
(in
coordinate_descent
)
usr_param
update_data()
(in
common_ops
)
update_data()
(in
levenberg_marquardt
)
usr_param
(in
usr_param
)
update_data()
(in
bfgs
)
update_data()
(in
newton
)
update_data()
(in
cauchy_point
)
update_data()
(in
steepest_descent
)
Z
zoom()
(in
minimise.line_search.nocedal_wright_wolfe
)
zoom()
(in
minimise.scipy_optimize
)
_
__init__()
(in
common_ops
)
__init__()
(in
dRi
)
__init__()
(in
model_free
)
__init__()
(in
data
)
__init__()
(in
dRi_prime
)
__init__()
(in
asymptotic
)
__init__()
(in
init_asymptotic
)
__init__()
(in
Jw
)
__init__()
(in
bootstrap
)
__init__()
(in
init_bootstrap
)
__init__()
(in
Jw
)
__init__()
(in
common_operations
)
__init__()
(in
init_cv
)
__init__()
(in
Jw
)
__init__()
(in
cv
)
__init__()
(in
init_farrow
)
__init__()
(in
mf_functions
)
__init__()
(in
exp_overall_disc
)
__init__()
(in
init_overall_disc
)
__init__()
(in
mf_trans_functions
)
__init__()
(in
farrow
)
__init__()
(in
init_palmer
)
__init__()
(in
Ri
)
__init__()
(in
model_selection
)
__init__()
(in
mfin_data
)
__init__()
(in
Ri_prime
)
__init__()
(in
overall_disc
)
__init__()
(in
file_ops
)
__init__()
(in
srls_functions
)
__init__()
(in
palmer
)
__init__()
(in
chi2
)
__init__()
(in
interpreter
)
__init__()
(in
palmer
)
__init__()
(in
d2chi2
)
__init__()
(in
macros
)
__init__()
(in
relax_fit
)
__init__()
(in
d2Jw
)
__init__()
(in
bfgs
)
__init__()
(in
mf
)
__init__()
(in
d2Jw
)
__init__()
(in
cauchy_point
)
__init__()
(in
star
)
__init__()
(in
d2Jw
)
__init__()
(in
coordinate_descent
)
__init__()
(in
tab_completion
)
__init__()
(in
d2Ri
)
__init__()
(in
generic_line_search
)
__init__()
(in
usr_param
)
__init__()
(in
d2Ri_prime
)
__init__()
(in
generic_minimise
)
__warningregistry__
(in
functions.d2ri
)
__init__()
(in
data
)
__init__()
(in
generic_trust_region
)
_endprint()
(in
minimise.scipy_optimize
)
__init__()
(in
dchi2
)
__init__()
(in
levenberg_marquardt
)
_linesearch_powell()
(in
minimise.scipy_optimize
)
__init__()
(in
dJw
)
__init__()
(in
newton
)
_myfunc()
(in
minimise.scipy_optimize
)
__init__()
(in
dJw
)
__init__()
(in
simplex
)
__init__()
(in
dJw
)
__init__()
(in
steepest_descent
)
Trees
Indices
Help
relax
Generated by Epydoc 3.0.1 on Tue Nov 25 10:43:41 2014
http://epydoc.sourceforge.net