Package generic_fns :: Module sequence :: Class Sequence
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Class Sequence

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Instance Methods [hide private]
 
__init__(self, relax)
Class containing functions specific to amino-acid sequence.
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add(self, run=None, res_num=None, res_name=None, select=1)
Function for adding a residue onto the sequence.
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copy(self, run1=None, run2=None)
Function for copying the sequence from run1 to run2.
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data_names(self)
Function for returning a list of names of data structures associated with the sequence.
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delete(self, run=None)
Function for deleting the sequence.
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display(self, run=None)
Function for displaying the sequence.
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load_PDB_sequence(self, run=None)
Function for loading the sequence out of a PDB file.
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read(self, run=None, file=None, dir=None, num_col=0, name_col=1, sep=None)
Function for reading sequence data.
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sort(self, run=None)
Function for sorting the sequence by residue number.
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sort_cmpfunc(self, x, y)
Sequence comparison function given to the ListType function 'sort'.
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write(self, run=None, file=None, dir=None, force=0)
Function for writing sequence data.
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Method Details [hide private]

load_PDB_sequence(self, run=None)

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Function for loading the sequence out of a PDB file.

This needs to be modified to handle multiple peptide chains.