Source Code for Module test_suite.sequence

 1  ############################################################################### 
 2  #                                                                             # 
 3  # Copyright (C) 2006 Edward d'Auvergne                                        # 
 4  #                                                                             # 
 5  # This file is part of the program relax.                                     # 
 6  #                                                                             # 
 7  # relax is free software; you can redistribute it and/or modify               # 
 8  # it under the terms of the GNU General Public License as published by        # 
 9  # the Free Software Foundation; either version 2 of the License, or           # 
10  # (at your option) any later version.                                         # 
11  #                                                                             # 
12  # relax is distributed in the hope that it will be useful,                    # 
13  # but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the               # 
15  # GNU General Public License for more details.                                # 
16  #                                                                             # 
17  # You should have received a copy of the GNU General Public License           # 
18  # along with relax; if not, write to the Free Software                        # 
19  # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA   # 
20  #                                                                             # 
21  ############################################################################### 
22   
23  import sys 
24   
25   
26 -class Sequence: 
27 -    def __init__(self, relax, test_name): 
28          """Class for testing the sequence functions.""" 
29   
30          self.relax = relax 
31   
32          # Sequence reading test. 
33          if test_name == 'read': 
34              # The name of the test. 
35              self.name = "The user function sequence.read()" 
36   
37              # The test. 
38              self.test = self.read 
39   
40          # Loading the sequence from a PDB file test. 
41          if test_name == 'pdb': 
42              # The name of the test. 
43              self.name = "Loading the sequence from a PDB file" 
44   
45              # The test. 
46              self.test = self.pdb 
47   
48   
49 -    def pdb(self, run): 
50          """The sequence loading from a PDB file test.""" 
51   
52          # Create the run. 
53          self.relax.generic.runs.create(run, 'mf') 
54   
55          # Read the sequence. 
56          self.relax.interpreter._PDB.pdb(run, file='test.pdb', dir=sys.path[-1] + '/test_suite/data', model=1, heteronuc='N', proton='H', load_seq=1) 
57   
58          # Success. 
59          return 1 
60   
61   
62 -    def read(self, run): 
63          """The sequence.read() test.""" 
64   
65          # Create the run. 
66          self.relax.generic.runs.create(run, 'mf') 
67   
68          # Read the sequence. 
69          self.relax.interpreter._Sequence.read(run, file='test_seq', dir=sys.path[-1] + '/test_suite/data') 
70   
71          # Success. 
72          return 1 
73