Module angles

Module for the manipulation of angular information.

Functions

angle_diff_frame()
Function for calculating the angle defining the XH vector in the diffusion frame.

ellipsoid_frame()
Calculate the spherical angles of the bond vector in the ellipsoid frame.

float fold_spherical_angles(theta, phi, theta_lower=0, theta_upper=6.28318530718, theta_window=6.28318530718, phi_lower=0, phi_upper=6.28318530718, phi_window=6.28318530718)
Fold the spherical angles taking symmetry into account.

spheroid_frame()
Function for calculating the angle alpha of the XH vector within the spheroid frame.

float wrap_angles(angle, lower, upper, window=6.28318530718)
Convert the given angle to be between the lower and upper values.

Variables

__package__ = 'generic_fns'

Imports: acos, pi, sin, dot, warn, pipes, exists_mol_res_spin_data, generate_spin_id, spin_loop, RelaxError, RelaxNoPdbError, RelaxNoSequenceError, RelaxNoTensorError, RelaxWarning

Function Details

fold_spherical_angles(theta, phi, theta_lower=0, theta_upper=6.28318530718, theta_window=6.28318530718, phi_lower=0, phi_upper=6.28318530718, phi_window=6.28318530718)

Fold the spherical angles taking symmetry into account.

The angles will be folded between:

   0 <= theta <= pi,
   0 <= phi <= 2*pi,

Parameters:

• theta (float) - The azimuthal angle.
• phi (float) - The polar angle.
• theta_lower (float) - The theta angle lower bound (defaults to 0).
• theta_upper (float) - The theta angle upper bound (defaults to 2*pi).
• theta_window (float) - The size of the theta angle window where symmetry exists (defaults to 2*pi).
• phi_lower (float) - The phi angle lower bound (defaults to 0).
• phi_upper (float) - The phi angle upper bound (defaults to 2*pi).
• phi_window (float) - The size of the phi angle window where symmetry exists (defaults to 2*pi).

Returns: float

The folded angles, theta and phi.

wrap_angles(angle, lower, upper, window=6.28318530718)

Convert the given angle to be between the lower and upper values.

Parameters:

• angle (float) - The starting angle.
• lower (float) - The lower bound.
• upper (float) - The upper bound.
• window (float) - The size of the window where symmetry exists (defaults to 2pi).

Returns: float

The wrapped angle.