Package test_suite :: Package system_tests :: Module sequence :: Class Sequence
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Class Sequence

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Class for testing the sequence functions.

Nested Classes [hide private]

Inherited from unittest.case.TestCase: failureException

Instance Methods [hide private]
 
setUp(self)
Set up for all the functional tests.
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test_load_protein_asp_atoms_from_pdb(self)
Load all aspartic acid atoms from the single residue in a loaded protein PDB file.
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test_load_protein_gly_N_Ca_spins_from_pdb(self)
Load the glycine backbone amide N and Ca spins from a loaded protein PDB file.
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test_load_protein_gly_N_spins_from_pdb(self)
Load the glycine backbone amide N spins from a loaded protein PDB file.
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test_load_protein_N_spins_from_pdb(self)
Load the protein backbone amide N spins from a loaded PDB file.
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test_read(self)
The sequence.read() test.
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test_sequence_copy(self)
Test the sequence.copy user function.
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Inherited from base_classes.SystemTestCase: __init__, script_exec, tearDown

Inherited from unittest.case.TestCase: __call__, __eq__, __hash__, __ne__, __repr__, __str__, addCleanup, addTypeEqualityFunc, assertAlmostEqual, assertAlmostEquals, assertDictContainsSubset, assertDictEqual, assertEqual, assertEquals, assertFalse, assertGreater, assertGreaterEqual, assertIn, assertIs, assertIsInstance, assertIsNone, assertIsNot, assertIsNotNone, assertItemsEqual, assertLess, assertLessEqual, assertListEqual, assertMultiLineEqual, assertNotAlmostEqual, assertNotAlmostEquals, assertNotEqual, assertNotEquals, assertNotIn, assertNotIsInstance, assertNotRegexpMatches, assertRaises, assertRaisesRegexp, assertRegexpMatches, assertSequenceEqual, assertSetEqual, assertTrue, assertTupleEqual, assert_, countTestCases, debug, defaultTestResult, doCleanups, fail, failIf, failIfAlmostEqual, failIfEqual, failUnless, failUnlessAlmostEqual, failUnlessEqual, failUnlessRaises, id, run, shortDescription, skipTest

Inherited from unittest.case.TestCase (private): _addSkip, _baseAssertEqual, _deprecate, _formatMessage, _getAssertEqualityFunc, _truncateMessage

Inherited from object: __delattr__, __format__, __getattribute__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Methods [hide private]

Inherited from unittest.case.TestCase: setUpClass, tearDownClass

Class Variables [hide private]

Inherited from unittest.case.TestCase: longMessage, maxDiff

Inherited from unittest.case.TestCase (private): _classSetupFailed, _diffThreshold

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

setUp(self)

source code 

Set up for all the functional tests.

Overrides: unittest.case.TestCase.setUp