Class User_functions

Class for testing special features of the user function GUI windows.

Instance Methods

exec_uf_pipe_create(self, pipe_name=None, pipe_type='mf')
Execute the pipe.create user function via the GUI user function window.

test_bug_2_structure_read_pdb_failure(self)
Catch bug #2, the failure of the structure.read_pdb user function.

test_bug_3_no_argument_validation(self)
Catch bug #3, the absence of user function argument validation in the GUI.

test_dx_map(self)
Test the operation of the dx.map user function GUI window.

test_spectrum_read_intensities(self)
Test the operation of the spectrum.read_intensities user function GUI window.

test_structure_add_atom(self)
Test the operation of the structure.add_atom user function GUI window.

test_structure_pdb_read(self)
Test the full operation of the structure.read_pdb user function GUI window.

test_structure_rotate(self)
Test the operation of the structure.rotate user function GUI window.

test_value_set(self)
Test the full operation of the value.set user function GUI window.

Inherited from base_classes.GuiTestCase: __init__, check_exceptions, clean_up_windows, new_analysis_wizard, script_exec, setUp, tearDown

Inherited from base_classes.GuiTestCase (private): _execute_uf

Method Details

exec_uf_pipe_create(self, pipe_name=None, pipe_type='mf')

Execute the pipe.create user function via the GUI user function window.

Parameters:

• pipe_name (str) - The pipe_name argument of the pipe.create user function.
• pipe_type (str) - The pipe_type argument of the pipe.create user function.

test_bug_2_structure_read_pdb_failure(self)

Catch bug #2, the failure of the structure.read_pdb user function.

This was reported by Stefano Ciurli.

test_bug_3_no_argument_validation(self)

Catch bug #3, the absence of user function argument validation in the GUI.

Without argument validation, the structure.read_pdb user function would fail with the error:

   relax> pipe.create(pipe_name='validation_test', pipe_type='mf', bundle=None)

   relax> structure.read_pdb(file=None, dir=None, read_mol=None, set_mol_name=None, read_model=None, set_model_num=None, alt_loc=None, verbosity=1, merge=False)
   Traceback (most recent call last):
     File "/data/relax/relax/gui/interpreter.py", line 306, in run
       fn(*args, **kwds)
     File "/data/relax/relax/pipe_control/structure/main.py", line 1277, in read_pdb
       if not access(file_path, F_OK):
   TypeError: coercing to Unicode: need string or buffer, NoneType found

However with validation, a RelaxStrFileError error is raised. This is caught by the GUI, presenting a pop up window for the error, printing out the error text, but not raising the error. Hence an error cannot be caught.