Source Code for Module test_suite.unit_tests._prompt.test_structure

  1  ############################################################################### 
  2  #                                                                             # 
  3  # Copyright (C) 2007-2008,2012,2019 Edward d'Auvergne                         # 
  4  #                                                                             # 
  5  # This file is part of the program relax (http://www.nmr-relax.com).          # 
  6  #                                                                             # 
  7  # This program is free software: you can redistribute it and/or modify        # 
  8  # it under the terms of the GNU General Public License as published by        # 
  9  # the Free Software Foundation, either version 3 of the License, or           # 
 10  # (at your option) any later version.                                         # 
 11  #                                                                             # 
 12  # This program is distributed in the hope that it will be useful,             # 
 13  # but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
 14  # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the               # 
 15  # GNU General Public License for more details.                                # 
 16  #                                                                             # 
 17  # You should have received a copy of the GNU General Public License           # 
 18  # along with this program.  If not, see <http://www.gnu.org/licenses/>.       # 
 19  #                                                                             # 
 20  ############################################################################### 
 21   
 22  # Python module imports. 
 23  from unittest import TestCase 
 24   
 25  # relax module imports. 
 26  from prompt.interpreter import Interpreter 
 27  from lib.errors import RelaxBoolError, RelaxIntListIntError, RelaxNumError, RelaxStrError, RelaxStrFileError, RelaxStrListStrError 
 28  from test_suite.unit_tests.structure_testing_base import Structure_base_class 
 29   
 30  # Unit test imports. 
 31  from test_suite.unit_tests._prompt.data_types import DATA_TYPES 
 32   
 33   
 34 -class Test_structure(Structure_base_class, TestCase): 
 35      """Unit tests for the functions of the 'prompt.structure' module.""" 
 36   
 37 -    def __init__(self, methodName=None): 
 38          """Set up the test case class for the system tests.""" 
 39   
 40          # Execute the base __init__ methods. 
 41          super(Test_structure, self).__init__(methodName) 
 42   
 43          # Load the interpreter. 
 44          self.interpreter = Interpreter(show_script=False, raise_relax_error=True) 
 45          self.interpreter.populate_self() 
 46          self.interpreter.on(verbose=False) 
 47   
 48          # Alias the user function class. 
 49          self.structure_fns = self.interpreter.structure 
 50   
 51   
 52 -    def test_create_diff_tensor_pdb_argfail_scale(self): 
 53          """The scale arg test of the structure.create_diff_tensor_pdb() user function.""" 
 54   
 55          # Loop over the data types. 
 56          for data in DATA_TYPES: 
 57              # Catch the float, bin, and int arguments, and skip them. 
 58              if data[0] == 'float' or data[0] == 'bin' or data[0] == 'int': 
 59                  continue 
 60   
 61              # The argument test. 
 62              self.assertRaises(RelaxNumError, self.structure_fns.create_diff_tensor_pdb, scale=data[1]) 
 63   
 64   
 65 -    def test_create_diff_tensor_pdb_argfail_file(self): 
 66          """The file arg test of the structure.create_diff_tensor_pdb() user function.""" 
 67   
 68          # Loop over the data types. 
 69          for data in DATA_TYPES: 
 70              # Catch the file and str arguments, and skip them. 
 71              if data[0] in ['file', 'str']: 
 72                  continue 
 73   
 74              # The argument test. 
 75              self.assertRaises(RelaxStrFileError, self.structure_fns.create_diff_tensor_pdb, file=data[1]) 
 76   
 77   
 78 -    def test_create_diff_tensor_pdb_argfail_dir(self): 
 79          """The dir arg test of the structure.create_diff_tensor_pdb() user function.""" 
 80   
 81          # Loop over the data types. 
 82          for data in DATA_TYPES: 
 83              # Catch the None and str arguments, and skip them. 
 84              if data[0] == 'None' or data[0] == 'str': 
 85                  continue 
 86   
 87              # The argument test. 
 88              self.assertRaises(RelaxStrError, self.structure_fns.create_diff_tensor_pdb, dir=data[1]) 
 89   
 90   
 91 -    def test_create_diff_tensor_pdb_argfail_force(self): 
 92          """The force arg test of the structure.create_diff_tensor_pdb() user function.""" 
 93   
 94          # Loop over the data types. 
 95          for data in DATA_TYPES: 
 96              # Catch the bool arguments, and skip them. 
 97              if data[0] == 'bool': 
 98                  continue 
 99   
100              # The argument test. 
101              self.assertRaises(RelaxBoolError, self.structure_fns.create_diff_tensor_pdb, force=data[1]) 
102   
103   
104 -    def test_create_vector_dist_argfail_length(self): 
105          """The length arg test of the structure.create_vector_dist() user function.""" 
106   
107          # Loop over the data types. 
108          for data in DATA_TYPES: 
109              # Catch the number arguments, and skip them. 
110              if data[0] == 'bin' or data[0] == 'int' or data[0] == 'float': 
111                  continue 
112   
113              # The argument test. 
114              self.assertRaises(RelaxNumError, self.structure_fns.create_vector_dist, length=data[1]) 
115   
116   
117 -    def test_create_vector_dist_argfail_file(self): 
118          """The file arg test of the structure.create_vector_dist() user function.""" 
119   
120          # Loop over the data types. 
121          for data in DATA_TYPES: 
122              # Catch the file and str arguments, and skip them. 
123              if data[0] in ['file', 'str']: 
124                  continue 
125   
126              # The argument test. 
127              self.assertRaises(RelaxStrFileError, self.structure_fns.create_vector_dist, file=data[1]) 
128   
129   
130 -    def test_create_vector_dist_argfail_dir(self): 
131          """The dir arg test of the structure.create_vector_dist() user function.""" 
132   
133          # Loop over the data types. 
134          for data in DATA_TYPES: 
135              # Catch the None and str arguments, and skip them. 
136              if data[0] == 'None' or data[0] == 'str': 
137                  continue 
138   
139              # The argument test. 
140              self.assertRaises(RelaxStrError, self.structure_fns.create_vector_dist, dir=data[1]) 
141   
142   
143 -    def test_create_vector_dist_argfail_symmetry(self): 
144          """The symmetry arg test of the structure.create_vector_dist() user function.""" 
145   
146          # Loop over the data types. 
147          for data in DATA_TYPES: 
148              # Catch the bool arguments, and skip them. 
149              if data[0] == 'bool': 
150                  continue 
151   
152              # The argument test. 
153              self.assertRaises(RelaxBoolError, self.structure_fns.create_vector_dist, symmetry=data[1]) 
154   
155   
156 -    def test_create_vector_dist_argfail_force(self): 
157          """The force arg test of the structure.create_vector_dist() user function.""" 
158   
159          # Loop over the data types. 
160          for data in DATA_TYPES: 
161              # Catch the bool arguments, and skip them. 
162              if data[0] == 'bool': 
163                  continue 
164   
165              # The argument test. 
166              self.assertRaises(RelaxBoolError, self.structure_fns.create_vector_dist, force=data[1]) 
167   
168   
169 -    def test_load_spins_argfail_spin_id(self): 
170          """The spin_id arg test of the structure.load_spins() user function.""" 
171   
172          # Loop over the data types. 
173          for data in DATA_TYPES: 
174              # Catch the None and str arguments, and skip them. 
175              if data[0] == 'None' or data[0] == 'str': 
176                  continue 
177   
178              # The argument test. 
179              self.assertRaises(RelaxStrError, self.structure_fns.load_spins, spin_id=data[1]) 
180   
181   
182 -    def test_read_pdb_argfail_file(self): 
183          """The file arg test of the structure.read_pdb() user function.""" 
184   
185          # Loop over the data types. 
186          for data in DATA_TYPES: 
187              # Catch the file and str arguments, and skip them. 
188              if data[0] in ['file', 'str']: 
189                  continue 
190   
191              # The argument test. 
192              self.assertRaises(RelaxStrFileError, self.structure_fns.read_pdb, file=data[1]) 
193   
194   
195 -    def test_read_pdb_argfail_dir(self): 
196          """The dir arg test of the structure.read_pdb() user function.""" 
197   
198          # Loop over the data types. 
199          for data in DATA_TYPES: 
200              # Catch the None and str arguments, and skip them. 
201              if data[0] == 'None' or data[0] == 'str': 
202                  continue 
203   
204              # The argument test. 
205              self.assertRaises(RelaxStrError, self.structure_fns.read_pdb, file='test.pdb', dir=data[1]) 
206   
207   
208 -    def test_read_pdb_argfail_read_mol(self): 
209          """The read_mol arg test of the structure.read_pdb() user function.""" 
210   
211          # Loop over the data types. 
212          for data in DATA_TYPES: 
213              # Catch the None, bin, int, and int list arguments, and skip them. 
214              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
215                  continue 
216   
217              # The argument test. 
218              self.assertRaises(RelaxIntListIntError, self.structure_fns.read_pdb, file='test.pdb', read_mol=data[1]) 
219   
220   
221 -    def test_read_pdb_argfail_set_mol_name(self): 
222          """The set_mol_name arg test of the structure.read_pdb() user function.""" 
223   
224          # Loop over the data types. 
225          for data in DATA_TYPES: 
226              # Catch the None, str, and str list arguments, and skip them. 
227              if data[0] == 'None' or data[0] == 'str' or data[0] == 'str list': 
228                  continue 
229   
230              # The argument test. 
231              self.assertRaises(RelaxStrListStrError, self.structure_fns.read_pdb, file='test.pdb', set_mol_name=data[1]) 
232   
233   
234 -    def test_read_pdb_argfail_read_model(self): 
235          """The read_model arg test of the structure.read_pdb() user function.""" 
236   
237          # Loop over the data types. 
238          for data in DATA_TYPES: 
239              # Catch the None, bin, int, and int list arguments, and skip them. 
240              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
241                  continue 
242   
243              # The argument test. 
244              self.assertRaises(RelaxIntListIntError, self.structure_fns.read_pdb, file='test.pdb', read_model=data[1]) 
245   
246   
247 -    def test_read_pdb_argfail_set_model_num(self): 
248          """The set_model_num arg test of the structure.read_pdb() user function.""" 
249   
250          # Loop over the data types. 
251          for data in DATA_TYPES: 
252              # Catch the None, bin, int, and int list arguments, and skip them. 
253              if data[0] == 'None' or data[0] == 'bin' or data[0] == 'int' or data[0] == 'int list': 
254                  continue 
255   
256              # The argument test. 
257              self.assertRaises(RelaxIntListIntError, self.structure_fns.read_pdb, file='test.pdb', set_model_num=data[1]) 
258