Author: bugman
Date: Tue May 2 07:20:51 2006
New Revision: 2488
URL: http://svn.gna.org/viewcvs/relax?rev=2488&view=rev
Log:
Creation of the 'CHANGES' file.
Added:
1.2/docs/CHANGES
Added: 1.2/docs/CHANGES
URL: http://svn.gna.org/viewcvs/relax/1.2/docs/CHANGES?rev=2488&view=auto
==============================================================================
--- 1.2/docs/CHANGES (added)
+++ 1.2/docs/CHANGES Tue May 2 07:20:51 2006
@@ -1,0 +1,62 @@
+Version 1.2.4
+(2 May 2006, from /1.2)
+http://svn.gna.org/svn/relax/tags/1.2.4
+
+ Features:
+ * Added elimination of Monte Carlo simulations to the sample scripts.
+ * Creation of the relax test suite 'relax --test-suite'.
+ * Creation of the committers file.
+ * The hyperref LaTeX package is now used in the relax manual.
+ * Addition of a chapter called 'Open source infrastructure'.
+ * Rewrite of the 'Development of relax' chapter.
+ * Addition of the user function 'run.hybridise()'. (task #3122)
+ * The user function 'relax_data.read()' no longer deselects residues
when no data is
+ encountered. (bug #5501)
+ * Residues are deselected by the user functions 'grid_search()',
'calc()', and 'minimise()'
+ if k > n or if there is less than 3 data sets. (bug #5501)
+ * Mapping parameter values onto the structure through Molmol macros.
(task #3146)
+ * Added support for arbitrary colour gradients in the Molmol macros.
(task #3146)
+ * Addition of a file for colour operations. All X11 colours and all
Molmol colours can be
+ selected by name. (task #3146)
+
+ Changes:
+ * The 'full_analysis.py' sample script now only searches over 6^6
rather than 11^6 grid
+ points for the ellipsoid diffusion tensor to speed up the analysis.
+ * Updated the manual to replace the references to 'make' with
'sconstruct'.
+ * Extension of the installation chapter.
+ * Changed the square and round brackets to curly brackets and
replaced ':' with '=' in the
+ user function docstrings.
+ * All the model-free Molmol functions have been moved into their own
class Molmol.
+ * The null device can now be opened instead of a file for writing by
passing 'devnull' as
+ the name.
+ * Updated the release checklist so that the directory 'relax-x.x.x'
is included in the
+ distributions rather than just 'relax'.
+ * Removed the bugs file 'docs/BUGS'.
+
+ Bugfixes:
+ * Small bugs in the sconstruct script have been removed.
+ * The value reading function can now handle rows which contain no
data.
+ * The ellipsoid diffusion tensor was being incorrectly initialised
in the 'full_analysis.py'
+ script.
+ * Another Numeric version issue. The model m0 with no parameters
which used to be handled
+ okay by the grid search and minimisation code was failing due to
changes in Numeric.
+ * In certain situations, the angle folding function which is called
after model-free
+ minimisation used the wrong run name.
+ * Fixed the -fPIC option segfault problem on some Linux systems.
(bug #5473)
+ * Changed the tm grid search which was between 6-12 ns to be between
1-12ns.
+ * Fixed some grammer in the intro chapter of the manual.
+ * Fixed a bug in the model-free sample script in the spheroid
diffusion tensor function.
+ * Removed the spaces in front of the \index{} commands from the
manual LaTeX source files.
+ * The diffusion parameters 'Diso', 'Dper', 'Dpar', 'Dratio', 'Dx',
'Dy', and 'Dz' are
+ generated on the fly. (bug #5559)
+ * Fixed the spacing after 'Gna!' in the manual.
+ * The 'grace.write()' user function now plots the associated errors.
(bug #5659)
+ * Fix to the parameter errors not being scaled in the value.read()
user function.
+ (bug #5670)
+ * Parameter errors were not always included in the results file.
(bug #5660)
+ * Removed the memory leak in the relaxation curve-fitting C modules.
(bug #5602)
+ * The user function 'value.set()' no longer raises RelaxError in
spectral density mapping
+ runs. (bug #5698)
+ * Fix to the broken Molmol pipe. (bug #5752)
+ * Fix of the failure of molmol.view() when the PDB is missing. (bug
#5753)
+ * Fix to the failure of relax_data.read() when relaxation data is
missing. (bug #5805)
r2488 - /1.2/docs/CHANGES