Author: bugman
Date: Thu Jul 20 07:03:38 2006
New Revision: 2519
URL: http://svn.gna.org/viewcvs/relax?rev=2519&view=rev
Log:
relax version 1.2.5.
This is mainly a bugfix release. A large number of bugs have been eliminated
including bug #5977,
bug #6288, bug #6383, bug #5806, bug #6384, bug #6388, bug #6389, and bug
#5746. These are
described in more detail below. To fix a few of these bugs large disruptive
changes were required.
This included the change of the local tm parameter name from 'tm' to
'local_tm' and the
simplification of the model-free model_statistics() function and modification
of the model-free
calculate() function. Therefore regressions and new bugs may appear in this
release, most likely
when the local tm parameter is encountered or during model selection.
The full list of changes is:
Features:
* The data analysis chapter has been split into four: The NOE,
relaxation curve-fitting,
model-free, and reduced spectral density mapping chapters.
* A section called the 'The core design of relax' has been added to
the the development
chapter of the manual.
* The 'Values, gradients, and Hessians' chapter of the manual is now
complete. These are
all the equations used during optimisation.
* The Hessian kite diagram and the gradient construction diagram have
been added to the
'Values, gradients, and Hessians' chapter of the manual.
Changes:
* The distribution archives now unpack to the directory 'relax-x.x.x'
rather than just'
'relax', where x.x.x is the version number.
* All chapters of the manual have been edited and proofed.
* The Sparky and XEasy peak intensity reading functions have been
split to allow the easy
addition of new peak intensity file types.
* Test of AIC model selection between diffusion tensors added to the
test suite. (To catch
bug #5746)
* Changing of the local tm parameter name of 'tm' to 'local_tm' to
distinguish it from the
global tumbling time 'tm'. (Preparation for fixing bug #6384)
Bugfixes:
* Fix of bug where self.relax.data.select_sim was treated as a list.
(bug #5977)
* The value.copy() function now handles the value of None. (bug #6288)
* The global flag is now set by the relax_data.delete() function.
(bug #6383)
* The model-free model_statistics() function now tests for the
presence of relaxation data.
(bug #5806)
* Sorting of global from local parameters in 'generic_fns/value.py'
simplified and fixed by
changing the parameter name 'tm' to 'local_tm'. (bug #6384)
* Model-free parameters now set in the OpenDX mapping test of the
test-suite. (bug #6388)
* Failure of model elimination because of a 'local_tm' and 'tm' mix
up. (bug #6389)
* Modification of the model-free calculate() function and elimination
of the 'combined' flag
from the self.model_statistics() function. (bug #5746)
Added:
tags/1.2.5/
- copied from r2518, 1.2/
r2519 - /tags/1.2.5/