Author: bugman
Date: Tue Nov 7 06:52:16 2006
New Revision: 2765
URL: http://svn.gna.org/viewcvs/relax?rev=2765&view=rev
Log:
Spell check of the PDB and PyMOL user functions and generic_fns code.
Modified:
branches/tensor_pdb/generic_fns/pdb.py
branches/tensor_pdb/prompt/pdb.py
branches/tensor_pdb/prompt/pymol.py
Modified: branches/tensor_pdb/generic_fns/pdb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/tensor_pdb/generic_fns/pdb.py?rev=2765&r1=2764&r2=2765&view=diff
==============================================================================
--- branches/tensor_pdb/generic_fns/pdb.py (original)
+++ branches/tensor_pdb/generic_fns/pdb.py Tue Nov 7 06:52:16 2006
@@ -219,7 +219,7 @@
# Final print out.
print " Total mass: M = " + `M`
- print " Center of mass: R = " + `R`
+ print " Centre of mass: R = " + `R`
# Return the centre of mass.
return R
@@ -266,7 +266,7 @@
res_num = 1
- # Center of mass.
+ # Centre of mass.
#################
# Calculate the centre of mass.
@@ -408,7 +408,7 @@
@type chain_id: str
@param res_num: The residue number.
@type res_num: int
- @param R: The center of mass.
+ @param R: The centre of mass.
@type R: Numeric array (Float64)
@param i: The Monte Carlo simulation index.
@type i: int
@@ -499,7 +499,7 @@
@type chain_id: str
@param res_num: The residue number.
@type res_num: int
- @param R: The center of mass.
+ @param R: The centre of mass.
@type R: Numeric array (Float64)
@param i: The Monte Carlo simulation index.
@type i: int
@@ -938,7 +938,7 @@
v in [0, 1].
Because theta is defined between [0, pi] and phi is defined between
[0, 2pi], for a uniform
- distribution u is only incremented half of 'inc'. The unit vectors
are gerenated using the
+ distribution u is only incremented half of 'inc'. The unit vectors
are generated using the
equation
| cos(theta) * sin(phi) |
Modified: branches/tensor_pdb/prompt/pdb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/tensor_pdb/prompt/pdb.py?rev=2765&r1=2764&r2=2765&view=diff
==============================================================================
--- branches/tensor_pdb/prompt/pdb.py (original)
+++ branches/tensor_pdb/prompt/pdb.py Tue Nov 7 06:52:16 2006
@@ -66,7 +66,7 @@
There are four different types of residue within the PDB. The
centre of mass of the
selected residues is represented as a single carbon atom of the
residue 'COM'. The
- ellipsoidal geometric shape constists of numberous H atoms of the
residue 'TNS'. The axes
+ ellipsoidal geometric shape consists of numerous H atoms of the
residue 'TNS'. The axes
of the tensor, when defined, are presented as the residue 'AXS' and
consist of carbon atoms:
one at the centre of mass and one at the end of each eigenvector.
Finally, if Monte Carlo
simulations were run and the diffusion tensor parameters were
allowed to vary then there
Modified: branches/tensor_pdb/prompt/pymol.py
URL:
http://svn.gna.org/viewcvs/relax/branches/tensor_pdb/prompt/pymol.py?rev=2765&r1=2764&r2=2765&view=diff
==============================================================================
--- branches/tensor_pdb/prompt/pymol.py (original)
+++ branches/tensor_pdb/prompt/pymol.py Tue Nov 7 06:52:16 2006
@@ -165,7 +165,7 @@
~~~~~~~~~~~
This function allows residues specific values to be mapped to a
structure through PyMOL
- macros. Currently only the 'classic' style, which is described
below, is availible.
+ macros. Currently only the 'classic' style, which is described
below, is available.
Colour
@@ -365,7 +365,7 @@
This function allows residues specific values to be mapped to a
structure through the
creation of a PyMOL macro which can be executed in PyMOL by clicking
on 'File,
Macro, Execute User...'. Currently only the 'classic' style, which
is described below, is
- availible.
+ available.
Colour
r2765 - in /branches/tensor_pdb: generic_fns/pdb.py prompt/pdb.py prompt/pymol.py