r2761 - /branches/tensor_pdb/generic_fns/pdb.py -- November 07, 2006 - 07:29

Author: bugman
Date: Tue Nov  7 06:46:20 2006
New Revision: 2761

URL: http://svn.gna.org/viewcvs/relax?rev=2761&view=rev
Log:
Removed the unused arguments to the 'self.write_pdb_file()' function.


Modified:
    branches/tensor_pdb/generic_fns/pdb.py

Modified: branches/tensor_pdb/generic_fns/pdb.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/tensor_pdb/generic_fns/pdb.py?rev=2761&r1=2760&r2=2761&view=diff
==============================================================================
--- branches/tensor_pdb/generic_fns/pdb.py (original)
+++ branches/tensor_pdb/generic_fns/pdb.py Tue Nov  7 06:46:20 2006
@@ -261,12 +261,9 @@
         # The atom and atomic connections data structures.
         self.atomic_data = {}
 
-        # Chain ID, residue number, residue name, chemical name, and 
occupancy.
+        # Chain ID and residue number.
         chain_id = 'A'
         res_num = 1
-        res_name = 'TNS'
-        chemical_name = 'Tensor'
-        occupancy = 1.0
 
 
         # Center of mass.
@@ -396,7 +393,7 @@
         tensor_pdb_file = self.relax.IO.open_write_file(self.file, self.dir, 
force=self.force)
 
         # Write the data.
-        self.write_pdb_file(tensor_pdb_file, chain_id, res_num, res_name, 
chemical_name, occupancy)
+        self.write_pdb_file(tensor_pdb_file)
 
         # Close the file.
         tensor_pdb_file.close()
@@ -973,7 +970,7 @@
         return vectors
 
 
-    def write_pdb_file(self, file, chain_id, res_num, res_name, 
chemical_name, occupancy):
+    def write_pdb_file(self, file):
         """Function for creating a PDB file from the given data.
 
         Introduction
@@ -1283,7 +1280,7 @@
 
         for array in atomic_arrays:
             # Write the HETATM record.
-            file.write("%-6s%5s %4s%1s%3s %1s%4s%1s   
%8.3f%8.3f%8.3f%6.2f%6.2f      %4s%2s%2s\n" % ('HETATM', array[0], array[1], 
'', array[2], array[3], array[4], '', array[5], array[6], array[7], 
occupancy, 0, array[8], array[9], ''))
+            file.write("%-6s%5s %4s%1s%3s %1s%4s%1s   
%8.3f%8.3f%8.3f%6.2f%6.2f      %4s%2s%2s\n" % ('HETATM', array[0], array[1], 
'', array[2], array[3], array[4], '', array[5], array[6], array[7], 1.0, 0, 
array[8], array[9], ''))
 
 
         # Terminate the chain - TER record.