r2916 - in /1.3: generic_fns/ prompt/ sample_scripts/ -- December 07, 2006 - 01:40

Author: bugman
Date: Thu Dec  7 01:39:30 2006
New Revision: 2916

URL: http://svn.gna.org/viewcvs/relax?rev=2916&view=rev
Log:
Renamed all instances of 'create_tensor_pdb' to 'create_diff_tensor_pdb'.


Modified:
    1.3/generic_fns/structure.py
    1.3/prompt/molmol.py
    1.3/prompt/pymol.py
    1.3/prompt/structure.py
    1.3/sample_scripts/diff_tensor_pdb.py

Modified: 1.3/generic_fns/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/structure.py?rev=2916&r1=2915&r2=2916&view=diff
==============================================================================
--- 1.3/generic_fns/structure.py (original)
+++ 1.3/generic_fns/structure.py Thu Dec  7 01:39:30 2006
@@ -247,8 +247,8 @@
             return R
 
 
-    def create_tensor_pdb(self, run=None, scale=1.8e-6, file=None, dir=None, 
force=0):
-        """The pdb loading function."""
+    def create_diff_tensor_pdb(self, run=None, scale=1.8e-6, file=None, 
dir=None, force=0):
+        """Create the PDB representation of the diffusion tensor."""
 
         # Arguments.
         self.scale = scale

Modified: 1.3/prompt/molmol.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/prompt/molmol.py?rev=2916&r1=2915&r2=2916&view=diff
==============================================================================
--- 1.3/prompt/molmol.py (original)
+++ 1.3/prompt/molmol.py Thu Dec  7 01:39:30 2006
@@ -256,7 +256,7 @@
         In executing this user function, a PDB file must have previously 
been loaded into this run,
         a geometric object or polygon representing the Brownian rotational 
diffusion tensor will be
         overlain with the loaded PDB file and displayed within Molmol.  The 
PDB file containing the
-        geometric object must be created using the complementary 
'pdb.create_tensor_pdb()' user
+        geometric object must be created using the complementary 
'pdb.create_diff_tensor_pdb()' user
         function.
 
         To display the diffusion tensor, the multiple commands will be 
executed.  To overlay the

Modified: 1.3/prompt/pymol.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/prompt/pymol.py?rev=2916&r1=2915&r2=2916&view=diff
==============================================================================
--- 1.3/prompt/pymol.py (original)
+++ 1.3/prompt/pymol.py Thu Dec  7 01:39:30 2006
@@ -257,7 +257,7 @@
         In executing this user function, a PDB file must have previously 
been loaded into this run,
         a geometric object or polygon representing the Brownian rotational 
diffusion tensor will be
         overlain with the loaded PDB file and displayed within PyMOL.  The 
PDB file containing the
-        geometric object must be created using the complementary 
'pdb.create_tensor_pdb()' user
+        geometric object must be created using the complementary 
'pdb.create_diff_tensor_pdb()' user
         function.
 
         The tensor PDB file is read in using the command:

Modified: 1.3/prompt/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/prompt/structure.py?rev=2916&r1=2915&r2=2916&view=diff
==============================================================================
--- 1.3/prompt/structure.py (original)
+++ 1.3/prompt/structure.py Thu Dec  7 01:39:30 2006
@@ -38,7 +38,7 @@
         self.__relax__ = relax
 
 
-    def create_tensor_pdb(self, run=None, scale=1.8e-6, file='tensor.pdb', 
dir=None, force=0):
+    def create_diff_tensor_pdb(self, run=None, scale=1.8e-6, 
file='tensor.pdb', dir=None, force=0):
         """Create a PDB file to represent the diffusion tensor.
 
         Keyword Arguments
@@ -137,7 +137,7 @@
 
         # Function intro text.
         if self.__relax__.interpreter.intro:
-            text = sys.ps3 + "structure.create_tensor_pdb("
+            text = sys.ps3 + "structure.create_diff_tensor_pdb("
             text = text + "run=" + `run`
             text = text + ", scale=" + `scale`
             text = text + ", file=" + `file`
@@ -166,7 +166,7 @@
             raise RelaxBinError, ('force flag', force)
 
         # Execute the functional code.
-        self.__relax__.generic.structure.create_tensor_pdb(run=run, 
scale=scale, file=file, dir=dir, force=force)
+        self.__relax__.generic.structure.create_diff_tensor_pdb(run=run, 
scale=scale, file=file, dir=dir, force=force)
 
 
     def read_pdb(self, run=None, file=None, dir=None, model=None, 
load_seq=1):

Modified: 1.3/sample_scripts/diff_tensor_pdb.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/diff_tensor_pdb.py?rev=2916&r1=2915&r2=2916&view=diff
==============================================================================
--- 1.3/sample_scripts/diff_tensor_pdb.py (original)
+++ 1.3/sample_scripts/diff_tensor_pdb.py Thu Dec  7 01:39:30 2006
@@ -12,7 +12,7 @@
 
 # Create the tensor PDB file.
 tensor_file = 'tensor.pdb'
-structure.create_tensor_pdb(name, file=tensor_file, force=1)
+structure.create_diff_tensor_pdb(name, file=tensor_file, force=1)
 
 # PyMOL.
 pymol.view(name)