Author: bugman
Date: Mon Mar 19 06:25:57 2007
New Revision: 3231
URL: http://svn.gna.org/viewcvs/relax?rev=3231&view=rev
Log:
Updated the data model redesign document.
The spin_loop() generator function and selection syntax parsing functions
tokenise() and
parse_token() are now implemented.
Modified:
1.3/docs/data_model_redesign
Modified: 1.3/docs/data_model_redesign
URL:
http://svn.gna.org/viewcvs/relax/1.3/docs/data_model_redesign?rev=3231&r1=3230&r2=3231&view=diff
==============================================================================
--- 1.3/docs/data_model_redesign (original)
+++ 1.3/docs/data_model_redesign Mon Mar 19 06:25:57 2007
@@ -34,16 +34,16 @@
3. Create the data pipe looping function for the 'pipes' argument (Chris
MacRaild, https://mail.gna.org/public/relax-devel/2006-10/msg00060.html,
Message-id: <1160562239.14487.98.camel@mrspell>). The user functions could
be implemented as functors (Chris MacRaild,
https://mail.gna.org/public/relax-devel/2007-01/msg00020.html, Message-ID:
<1168432131.7569.338.camel@mrspell>). The design will need to take into
account the user function docstrings, relax help system, and the relax manual
docstring fetching code.
-4. Create the spin_loop function (Edward d'Auvergne,
https://mail.gna.org/public/relax-devel/2006-10/msg00057.html, Message-id:
<1160557041.9523.74.camel@xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx>). Use a
generator function, using the yield statement, to return the spin data
containers which are essentially pointers to the data (Gary Thompson,
https://mail.gna.org/public/relax-devel/2007-01/msg00014.html, Message-id:
<f001463a0701071417w6bd7927cp8fdd052e698575ec@xxxxxxxxxxxxxx>). The
implementation was essentially given by Chris MacRaild at
https://mail.gna.org/public/relax-devel/2007-01/msg00036.html (Message-ID:
<1168883717.7569.511.camel@mrspell>).
+4 [Done]. Create the spin_loop function (Edward d'Auvergne,
https://mail.gna.org/public/relax-devel/2006-10/msg00057.html, Message-id:
<1160557041.9523.74.camel@xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx>). Use a
generator function, using the yield statement, to return the spin data
containers which are essentially pointers to the data (Gary Thompson,
https://mail.gna.org/public/relax-devel/2007-01/msg00014.html, Message-id:
<f001463a0701071417w6bd7927cp8fdd052e698575ec@xxxxxxxxxxxxxx>). The
implementation was essentially given by Chris MacRaild at
https://mail.gna.org/public/relax-devel/2007-01/msg00036.html (Message-ID:
<1168883717.7569.511.camel@mrspell>).
-5. Implement a parser for the following molecule/residue/spin selection
syntax (Gary Thompson,
https://mail.gna.org/public/relax-devel/2007-01/msg00014.html, Message-id:
<f001463a0701071417w6bd7927cp8fdd052e698575ec@xxxxxxxxxxxxxx>):
+5 [Done]. Implement a parser for the following molecule/residue/spin
selection syntax (Gary Thompson,
https://mail.gna.org/public/relax-devel/2007-01/msg00014.html, Message-id:
<f001463a0701071417w6bd7927cp8fdd052e698575ec@xxxxxxxxxxxxxx>):
#<molecule number> |
<molecule_name>:<residue_selection>[,<residue_selection>...]@<atom_selection>
[,<atom_selection>]
residue_selection=<residue_number> | <residue_range> | <residue_type>
residue_selection=<residue_number>-<residue_number>
atom_selection=<string_and_wildcards>
This syntax will need to be properly referenced (in addition to being fully
described) in the user function docstrings. I.e. the reference for Molmol
syntax, the reference for UCSF syntax, etc. We need to find the source and
name of the syntax.
-6. Convert the methods of the class 'Selection' from the file
'generic_fns/selection.py' into methods and then add the following functions
(Chris MacRaild at
https://mail.gna.org/public/relax-devel/2007-01/msg00036.html Message-ID:
<1168883717.7569.511.camel@mrspell>; Edward d'Auvergne,
https://mail.gna.org/public/relax-devel/2007-01/msg00041.html, Message-ID:
<7f080ed10701190408i8a5dee3y8ccbe1aba11bcba@xxxxxxxxxxxxxx>):
+6 [Done]. Convert the methods of the class 'Selection' from the file
'generic_fns/selection.py' into methods and then add the following functions
(Chris MacRaild at
https://mail.gna.org/public/relax-devel/2007-01/msg00036.html Message-ID:
<1168883717.7569.511.camel@mrspell>; Edward d'Auvergne,
https://mail.gna.org/public/relax-devel/2007-01/msg00041.html, Message-ID:
<7f080ed10701190408i8a5dee3y8ccbe1aba11bcba@xxxxxxxxxxxxxx>):
parse_token()
tokenise()
r3231 - /1.3/docs/data_model_redesign