Author: bugman
Date: Sun Jun 24 17:33:14 2007
New Revision: 3310
URL: http://svn.gna.org/viewcvs/relax?rev=3310&view=rev
Log:
Blocked revisions 3303-3308 via svnmerge
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r3303 | bugman | 2007-06-20 11:09:54 +0200 (Wed, 20 Jun 2007) | 28 lines
Hand ported r3302 from the 1.2 line, the fix for bug #9259
(https://gna.org/bugs/?9259).
The commands used where:
svn merge -r3301:3302
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.2/maths_fns/jw_mapping.py
maths_fns/jw_mapping.py
svn merge -r3301:3302
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.2/test_suite/jw_mapping.py
test_suite/system_tests/jw_mapping.py
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r3302 | bugman | 2007-06-20 09:29:52 +0200 (Wed, 20 Jun 2007) | 15 lines
Changed paths:
M /1.2/maths_fns/jw_mapping.py
M /1.2/test_suite/jw_mapping.py
Fix for bug #9259 (https://gna.org/bugs/?9259).
This fix was created by Sebastien Morin (sebastien dott morin dot 1 at
ulaval dot ca) and attached
as the patch file 'patch_2007-06-19' attached to the bug report. The
thread on the relax-devel
mailing list begins at
https://mail.gna.org/public/relax-devel/2007-06/msg00001.html. The exact
source of the bug was identified here
https://mail.gna.org/public/relax-devel/2007-06/msg00003.html.
An important explanation of SI vs. CGS units, frequency vs. angular
frequency, and why the frequency
is converted to angular frequency by multiplying by 2pi is located here
https://mail.gna.org/public/relax-devel/2007-06/msg00012.html.
The bug was that the heteronuclear frequency wX was being overwritten by
the proton frequency wH in
the reduced spectral density mapping code. Both the reduced spectral
mapping code and the test
suite have been fixed by Seb.
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r3304 | bugman | 2007-06-24 16:56:25 +0200 (Sun, 24 Jun 2007) | 20 lines
Ported r3287 from the 1.2 line.
The command used was:
svn merge -r3286:3287 svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.2
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r3287 | bugman | 2007-05-08 23:39:21 +0200 (Tue, 08 May 2007) | 9 lines
Changed paths:
M /1.2/sample_scripts/full_analysis.py
Improvements to the 'full_analysis.py' sample script.
The script's documentation has been shifted from the __init__() method
docstring to the module
docstring.
All of the options which need to be modified by the user have been shifted
to the top of the script
as global variables. This means that the user doesn't even need to look
at the complex code to
operate the script.
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r3305 | bugman | 2007-06-24 17:00:32 +0200 (Sun, 24 Jun 2007) | 14 lines
Ported r3291 from the 1.2 line.
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r3291 | bugman | 2007-05-09 00:52:00 +0200 (Wed, 09 May 2007) | 6 lines
Changed paths:
M /1.2/docs/latex/model-free.tex
Renamed "Kay's paradigm" to "the diffusion seeded paradigm".
Kay's paradigm was accidentally mislabelled. This paradigm should have
been stated to be the
diffusion seeded paradigm using the T1/T2 ratio to initially estimate the
diffusion tensor!
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r3306 | bugman | 2007-06-24 17:03:23 +0200 (Sun, 24 Jun 2007) | 13 lines
Ported r3292 from the 1.2 line.
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r3292 | bugman | 2007-05-09 00:52:48 +0200 (Wed, 09 May 2007) | 5 lines
Changed paths:
M /1.2/sample_scripts/full_analysis.py
Bug fix for the full_analysis.py script.
The list of model-free models needed to be placed into 'self.runs' for
model selection to work.
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r3307 | bugman | 2007-06-24 17:08:03 +0200 (Sun, 24 Jun 2007) | 18 lines
Ported r3293 from the 1.2 line.
The command used was:
svn merge -r3292:3293
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.2/specific_fns/model_free.py
specific_fns/model_free/model_free.py
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r3293 | bugman | 2007-05-09 00:59:17 +0200 (Wed, 09 May 2007) | 7 lines
Changed paths:
M /1.2/specific_fns/model_free.py
Bug fix.
The reading of model-free results files was failing for residues with the
parameters vector of None
(as well as the parameter set set to None and the model-free equation set
to None). This situation
occurs after model selection when the residue is deselected.
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r3308 | bugman | 2007-06-24 17:13:00 +0200 (Sun, 24 Jun 2007) | 18 lines
Ported r3294 from the 1.2 line.
The command used was:
svn merge -r3293:3294
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.2/specific_fns/model_free.py
specific_fns/model_free/model_free.py
.....
r3294 | bugman | 2007-05-09 00:59:45 +0200 (Wed, 09 May 2007) | 7 lines
Changed paths:
M /1.2/specific_fns/model_free.py
Bug fix.
The setting up of Monte Carlo simulations was failing because of the
existance of the empty
parameter vector []. This situation occurs after model selection when the
residue is deselected
(after the reading of a model-free results file).
.....
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Modified:
1.2/ (props changed)
Propchange: 1.2/
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Binary property 'svnmerge-blocked' - no diff available.
r3310 - /1.2/