r3867 - /1.3/test_suite/unit_tests/sequence_testing_base.py -- November 23, 2007 - 17:17

Author: bugman
Date: Fri Nov 23 17:17:10 2007
New Revision: 3867

URL: http://svn.gna.org/viewcvs/relax?rev=3867&view=rev
Log:
Implemented a unit test to test the display of an amino acid sequence.


Modified:
    1.3/test_suite/unit_tests/sequence_testing_base.py

Modified: 1.3/test_suite/unit_tests/sequence_testing_base.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/unit_tests/sequence_testing_base.py?rev=3867&r1=3866&r2=3867&view=diff
==============================================================================
--- 1.3/test_suite/unit_tests/sequence_testing_base.py (original)
+++ 1.3/test_suite/unit_tests/sequence_testing_base.py Fri Nov 23 17:17:10 
2007
@@ -63,6 +63,27 @@
             remove(self.tmpfile)
         except OSError:
             pass
+
+
+    def test_display_protein_sequence(self):
+        """Test the display of an amino acid sequence.
+
+        The functions tested are generic_fns.sequence.display() and 
prompt.sequence.display().
+        """
+
+        # Alias the 'orig' relax data store.
+        cdp = relax_data_store['orig']
+
+        # Create a simple animo acid sequence.
+        cdp.mol[0].res[0].num = 1
+        cdp.mol[0].res[0].name = 'GLY'
+        cdp.mol[0].res.add_item('PRO', 2)
+        cdp.mol[0].res.add_item('LEU', 3)
+        cdp.mol[0].res.add_item('GLY', 4)
+        cdp.mol[0].res.add_item('SER', 5)
+
+        # Try displaying the residue sequence.
+        self.sequence_fns.display(res_num_col=0, res_name_col=1)
 
 
     def test_read_protein_noe_data(self):