Author: bugman
Date: Fri Nov 23 18:14:28 2007
New Revision: 3870
URL: http://svn.gna.org/viewcvs/relax?rev=3870&view=rev
Log:
Merged revisions 3840-3862 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
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r3840 | bugman | 2007-11-23 13:52:34 +0100 (Fri, 23 Nov 2007) | 3 lines
Fixed the system test for loading the of amino acid sequence data.
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r3841 | bugman | 2007-11-23 13:53:55 +0100 (Fri, 23 Nov 2007) | 3 lines
Updated the system test of loading a sequence from a PDB file to use the
new relax design.
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r3842 | bugman | 2007-11-23 13:55:04 +0100 (Fri, 23 Nov 2007) | 3 lines
Updated the copyright notice.
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r3843 | bugman | 2007-11-23 15:16:25 +0100 (Fri, 23 Nov 2007) | 3 lines
Updated all the system tests to use the new relax design!
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r3844 | bugman | 2007-11-23 15:28:27 +0100 (Fri, 23 Nov 2007) | 3 lines
Removed the now useless methods of the generic_fns.sequence.Sequence class.
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r3845 | bugman | 2007-11-23 15:29:47 +0100 (Fri, 23 Nov 2007) | 3 lines
Converted the diplay() class method to a module function.
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r3846 | bugman | 2007-11-23 15:31:22 +0100 (Fri, 23 Nov 2007) | 3 lines
Converted the write() class method to a module function.
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r3847 | bugman | 2007-11-23 15:32:23 +0100 (Fri, 23 Nov 2007) | 3 lines
Converted the load_PDB_sequence() class method to a module function.
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r3848 | bugman | 2007-11-23 15:33:37 +0100 (Fri, 23 Nov 2007) | 3 lines
Removed the import of the now non-existant Sequence class.
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r3849 | bugman | 2007-11-23 15:38:54 +0100 (Fri, 23 Nov 2007) | 3 lines
The display() function now works (although not fully).
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r3850 | bugman | 2007-11-23 15:41:40 +0100 (Fri, 23 Nov 2007) | 3 lines
Fixes for the write() function.
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r3851 | bugman | 2007-11-23 15:42:34 +0100 (Fri, 23 Nov 2007) | 3 lines
Added the import for the count_spins() function.
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r3852 | bugman | 2007-11-23 15:48:05 +0100 (Fri, 23 Nov 2007) | 3 lines
Wrote the count_spins() function.
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r3853 | bugman | 2007-11-23 15:50:07 +0100 (Fri, 23 Nov 2007) | 3 lines
Added the missing import of the open_write_file() function.
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r3854 | bugman | 2007-11-23 15:50:48 +0100 (Fri, 23 Nov 2007) | 3 lines
Added the missing import of the spin_loop() function.
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r3855 | bugman | 2007-11-23 16:04:22 +0100 (Fri, 23 Nov 2007) | 3 lines
Fix for the unit test for writing an amino acid sequence.
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r3856 | bugman | 2007-11-23 16:04:44 +0100 (Fri, 23 Nov 2007) | 3 lines
A fix for the write() function.
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r3857 | bugman | 2007-11-23 16:06:30 +0100 (Fri, 23 Nov 2007) | 3 lines
Another fix for the unit test for writing an amino acid sequence.
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r3858 | bugman | 2007-11-23 16:19:15 +0100 (Fri, 23 Nov 2007) | 3 lines
And another fix for the unit test for writing an amino acid sequence.
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r3859 | bugman | 2007-11-23 16:29:32 +0100 (Fri, 23 Nov 2007) | 3 lines
Big improvements to the write() function.
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r3860 | bugman | 2007-11-23 16:30:11 +0100 (Fri, 23 Nov 2007) | 5 lines
Final fix for the unit test for writing an amino acid sequence.
The md5sum has been added to the test.
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r3861 | bugman | 2007-11-23 16:32:14 +0100 (Fri, 23 Nov 2007) | 3 lines
Removal of debugging code from the write() function and an update to the
md5sum in its unit test.
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r3862 | bugman | 2007-11-23 16:38:19 +0100 (Fri, 23 Nov 2007) | 3 lines
Updated the docstring of the write() function.
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Modified:
branches/N_state_model/ (props changed)
branches/N_state_model/generic_fns/main.py
branches/N_state_model/generic_fns/selection.py
branches/N_state_model/generic_fns/sequence.py
branches/N_state_model/test_suite/system_tests/angles.py
branches/N_state_model/test_suite/system_tests/diffusion_tensor.py
branches/N_state_model/test_suite/system_tests/generic.py
branches/N_state_model/test_suite/system_tests/jw_mapping.py
branches/N_state_model/test_suite/system_tests/main.py
branches/N_state_model/test_suite/system_tests/model_free.py
branches/N_state_model/test_suite/system_tests/model_selection.py
branches/N_state_model/test_suite/system_tests/relax_fit.py
branches/N_state_model/test_suite/system_tests/sequence.py
branches/N_state_model/test_suite/unit_tests/sequence_testing_base.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/N_state_model/generic_fns/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/main.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/generic_fns/selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/selection.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/generic_fns/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/sequence.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/angles.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/angles.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/diffusion_tensor.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/generic.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/generic.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/jw_mapping.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/main.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/model_free.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/model_selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/model_selection.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/relax_fit.py?rev=3870&r1=3869&r2=3870&view=diff
Modified: branches/N_state_model/test_suite/system_tests/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/sequence.py?rev=3870&r1=3869&r2=3870&view=diff
Modified:
branches/N_state_model/test_suite/unit_tests/sequence_testing_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/sequence_testing_base.py?rev=3870&r1=3869&r2=3870&view=diff
r3870 - in /branches/N_state_model: ./ generic_fns/ test_suite/system_tests/ test_suite/unit_tests/