Author: bugman
Date: Sun Nov 25 15:36:17 2007
New Revision: 3906
URL: http://svn.gna.org/viewcvs/relax?rev=3906&view=rev
Log:
Merged revisions 3872-3905 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r3872 | bugman | 2007-11-24 12:00:37 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the generic_fns.selection.count_spins() function.
........
r3873 | bugman | 2007-11-24 12:02:36 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the generic_fns.selection.count_spins() function, for
when there is no data.
........
r3874 | bugman | 2007-11-24 12:05:20 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the spin loop when no data is
present.
........
r3875 | bugman | 2007-11-24 12:06:44 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the molecule loop when no
data is present.
........
r3876 | bugman | 2007-11-24 12:07:46 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the residue loop when no data
is present.
........
r3877 | bugman | 2007-11-24 12:16:30 +0100 (Sat, 24 Nov 2007) | 3 lines
Created the test() function for testing the existence of the current or
given data pipe.
........
r3878 | bugman | 2007-11-24 12:17:33 +0100 (Sat, 24 Nov 2007) | 3 lines
Added the generic_fns.pipes.test() function to the molecule, residue, and
spin loop functions.
........
r3879 | bugman | 2007-11-24 12:22:24 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the residue loop when no data
pipe is present.
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r3880 | bugman | 2007-11-24 12:33:06 +0100 (Sat, 24 Nov 2007) | 6 lines
Fixed the unit test of the residue loop with no data pipes present.
The unittest framework couldn't handle the generator function, so an
intermediary function was
created!
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r3881 | bugman | 2007-11-24 12:34:21 +0100 (Sat, 24 Nov 2007) | 3 lines
Fixes for the unit tests of the spin and molecule loops when no data is
present.
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r3882 | bugman | 2007-11-24 12:35:21 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the spin loop when no data
pipe is present.
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r3883 | bugman | 2007-11-24 12:36:22 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test for the proper operation of the molecule loop when no
data pipe is present.
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r3884 | bugman | 2007-11-24 12:38:02 +0100 (Sat, 24 Nov 2007) | 3 lines
Fix for the test_count_no_spins unit test - a data pipe now exists.
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r3885 | bugman | 2007-11-24 12:40:35 +0100 (Sat, 24 Nov 2007) | 3 lines
Added a unit test, the counting of the number of spins should raise an
error when no pipe exists.
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r3886 | bugman | 2007-11-24 20:41:29 +0100 (Sat, 24 Nov 2007) | 5 lines
Wrote the exists_mol_res_spin_data() function.
This function determines if any molecule-residue-spin data exists.
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r3887 | bugman | 2007-11-24 20:49:54 +0100 (Sat, 24 Nov 2007) | 3 lines
Wrote 4 unit tests for the generic_fns.selection.exists_mol_res_spin_data()
function.
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r3888 | bugman | 2007-11-24 20:52:11 +0100 (Sat, 24 Nov 2007) | 3 lines
Bug fix for generic_fns.selection.exists_mol_res_spin_data(). No data
pipes are now handled.
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r3889 | bugman | 2007-11-24 20:53:59 +0100 (Sat, 24 Nov 2007) | 6 lines
Bug fix.
This is for the unit test for determining if molecule-residue-spin data
exists when no data pipe
exists.
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r3890 | bugman | 2007-11-24 20:59:06 +0100 (Sat, 24 Nov 2007) | 5 lines
Bug fix for generic_fns.selection.exists_mol_res_spin_data().
If no spins are selected, the function returns False!
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r3891 | bugman | 2007-11-24 21:03:28 +0100 (Sat, 24 Nov 2007) | 5 lines
Bug fix for generic_fns.selection.exists_mol_res_spin_data().
The testing the presence of data when only a single spin container exists
now works.
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r3892 | bugman | 2007-11-24 21:06:20 +0100 (Sat, 24 Nov 2007) | 3 lines
Used the generic_fns.pipes.test() function a bit more.
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r3893 | bugman | 2007-11-24 21:06:56 +0100 (Sat, 24 Nov 2007) | 3 lines
Removed a nasty debugging line.
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r3894 | bugman | 2007-11-24 21:14:14 +0100 (Sat, 24 Nov 2007) | 5 lines
Fixes for the molecule, residue, and spin loops.
The functions do nothing if no molecule-residue-spin data exists.
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r3895 | bugman | 2007-11-24 21:30:18 +0100 (Sat, 24 Nov 2007) | 5 lines
Bug fix for generic_fns.selection.exists_mol_res_spin_data().
Fixed the circular dependence cased by calling the spin_loop() generator
function!
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r3896 | bugman | 2007-11-25 11:54:12 +0100 (Sun, 25 Nov 2007) | 3 lines
Updated the data model redesign document. All the sequence user functions
are implemented.
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r3897 | bugman | 2007-11-25 12:08:22 +0100 (Sun, 25 Nov 2007) | 3 lines
Wrote 5 unit tests for the generic_fns.selection.exists_mol_res_spin_data()
function.
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r3898 | bugman | 2007-11-25 12:12:43 +0100 (Sun, 25 Nov 2007) | 3 lines
Big bug fix for the generic_fns.selection.exists_mol_res_spin_data()
function.
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r3899 | bugman | 2007-11-25 12:17:02 +0100 (Sun, 25 Nov 2007) | 5 lines
Removed the selection argument to the
generic_fns.selection.exists_mol_res_spin_data() function.
The associated unit test has also been removed.
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r3900 | bugman | 2007-11-25 15:08:29 +0100 (Sun, 25 Nov 2007) | 3 lines
Removed the run argument from the diffusion_tensor.init() user function.
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r3901 | bugman | 2007-11-25 15:11:49 +0100 (Sun, 25 Nov 2007) | 3 lines
Set up the base class for unit tests of the diffusion_tensor modules.
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r3902 | bugman | 2007-11-25 15:14:00 +0100 (Sun, 25 Nov 2007) | 3 lines
Created the framework for the unit tests of the diffusion_tensor user
functions.
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r3903 | bugman | 2007-11-25 15:14:40 +0100 (Sun, 25 Nov 2007) | 3 lines
File rename.
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r3904 | bugman | 2007-11-25 15:21:19 +0100 (Sun, 25 Nov 2007) | 3 lines
A file to be imported by all the prompt user test modules for faking the
relax instance structure.
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r3905 | bugman | 2007-11-25 15:29:00 +0100 (Sun, 25 Nov 2007) | 3 lines
Updated all the prompt module unit tests to use the new 'fake_relax'
structure.
........
Added:
branches/N_state_model/test_suite/unit_tests/_prompt/fake_relax.py
- copied unchanged from r3905,
1.3/test_suite/unit_tests/_prompt/fake_relax.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
- copied unchanged from r3905,
1.3/test_suite/unit_tests/_prompt/test_diffusion_tensor.py
branches/N_state_model/test_suite/unit_tests/diffusion_tensor_testing_base.py
- copied unchanged from r3905,
1.3/test_suite/unit_tests/diffusion_tensor_testing_base.py
Modified:
branches/N_state_model/ (props changed)
branches/N_state_model/docs/data_model_redesign
branches/N_state_model/generic_fns/pipes.py
branches/N_state_model/generic_fns/selection.py
branches/N_state_model/prompt/diffusion_tensor.py
branches/N_state_model/test_suite/unit_tests/_generic_fns/test_selection.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_molecule.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_residue.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_sequence.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_spin.py
branches/N_state_model/test_suite/unit_tests/_prompt/test_state.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/N_state_model/docs/data_model_redesign
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/docs/data_model_redesign?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/generic_fns/pipes.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/pipes.py?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/generic_fns/selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/selection.py?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/prompt/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/prompt/diffusion_tensor.py?rev=3906&r1=3905&r2=3906&view=diff
Modified:
branches/N_state_model/test_suite/unit_tests/_generic_fns/test_selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_generic_fns/test_selection.py?rev=3906&r1=3905&r2=3906&view=diff
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_molecule.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_prompt/test_molecule.py?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/test_suite/unit_tests/_prompt/test_residue.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_prompt/test_residue.py?rev=3906&r1=3905&r2=3906&view=diff
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_sequence.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_prompt/test_sequence.py?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/test_suite/unit_tests/_prompt/test_spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_prompt/test_spin.py?rev=3906&r1=3905&r2=3906&view=diff
Modified: branches/N_state_model/test_suite/unit_tests/_prompt/test_state.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/_prompt/test_state.py?rev=3906&r1=3905&r2=3906&view=diff
r3906 - in /branches/N_state_model: ./ docs/ generic_fns/ prompt/ test_suite/unit_tests/ test_suite/unit_tests/_generic_fns/...