r4556 - /branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py -- January 09, 2008 - 15:53

Author: bugman
Date: Wed Jan  9 15:53:20 2008
New Revision: 4556

URL: http://svn.gna.org/viewcvs/relax?rev=4556&view=rev
Log:
Another design change for the N-state model (as coded in the 5-state system 
test).


Modified:
    branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py

Modified: branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py?rev=4556&r1=4555&r2=4556&view=diff
==============================================================================
--- branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py 
(original)
+++ branches/N_state_model/test_suite/system_tests/scripts/5_state_xz.py Wed 
Jan  9 15:53:20 2008
@@ -13,14 +13,15 @@
 
 
 # Create the data pipe.
-pipe.create('C domain', 'N-state')
+pipe.create('test', 'N-state')
+
 
 # Load the C-terminal alignment tensors..
-n_state_model.tensor_full(label='chi1', domain='C', params=(-1/2., -1/2.,  
0.,   0.,     0.))
-n_state_model.tensor_full(label='chi2', domain='C', params=(-1/8., -7/8.,  
0.,   0.,     0.))
-n_state_model.tensor_full(label='chi3', domain='C', params=(-1/8.,  1/16., 
0.,   0.,    -15/16.))
-n_state_model.tensor_full(label='chi4', domain='C', params=(7/16., -7/8.,  
0.,   9/16.,  0.))
-n_state_model.tensor_full(label='chi5', domain='C', params=(-1/2., -1/2.,  
3/8., 0.,     0.))
+n_state_model.init(label='chi1', domain='C', red=False, params=(-1/2., 
-1/2.,  0.,   0.,     0.))
+n_state_model.init(label='chi2', domain='C', red=False, params=(-1/8., 
-7/8.,  0.,   0.,     0.))
+n_state_model.init(label='chi3', domain='C', red=False, params=(-1/8.,  
1/16., 0.,   0.,    -15/16.))
+n_state_model.init(label='chi4', domain='C', red=False, params=(7/16., 
-7/8.,  0.,   9/16.,  0.))
+n_state_model.init(label='chi5', domain='C', red=False, params=(-1/2., 
-1/2.,  3/8., 0.,     0.))
 
 # Calculate the singular values.
 n_state_model.svd(basis_set=0, domain='C')
@@ -31,15 +32,12 @@
 n_state_model.matrix_angles(basis_set=1, domain='C')
 
 
-# Create the data pipe.
-pipe.create('N domain', 'N-state')
-
 # Load the N-terminal alignment tensors.
-n_state_model.tensor_red(label='chi1', domain='N', params=(1/4.,   -1/2.,   
0.,              3/4.,   0.))
-n_state_model.tensor_red(label='chi2', domain='N', params=(7/16.,  -7/8.,   
0.,              9/16.,  0.))
-n_state_model.tensor_red(label='chi3', domain='N', params=(-1/32.,  1/16., 
-15/(16*sqrt(2)), 3/32., -15/(16*sqrt(2))))
-n_state_model.tensor_red(label='chi4', domain='N', params=(1.,     -7/8.,   
0.,              0.,     0.))
-n_state_model.tensor_red(label='chi5', domain='N', params=(1/4.,   -1/2.,   
3/(8*sqrt(2)),   3/4.,  -3/(8*sqrt(2))))
+n_state_model.init(label='chi1', domain='N', red=True, params=(1/4.,   
-1/2.,   0.,              3/4.,   0.))
+n_state_model.init(label='chi2', domain='N', red=True, params=(7/16.,  
-7/8.,   0.,              9/16.,  0.))
+n_state_model.init(label='chi3', domain='N', red=True, params=(-1/32.,  
1/16., -15/(16*sqrt(2)), 3/32., -15/(16*sqrt(2))))
+n_state_model.init(label='chi4', domain='N', red=True, params=(1.,     
-7/8.,   0.,              0.,     0.))
+n_state_model.init(label='chi5', domain='N', red=True, params=(1/4.,   
-1/2.,   3/(8*sqrt(2)),   3/4.,  -3/(8*sqrt(2))))
 
 # Calculate the singular values.
 n_state_model.svd(basis_set=0, domain='N')
@@ -49,6 +47,7 @@
 n_state_model.matrix_angles(basis_set=0, domain='N')
 n_state_model.matrix_angles(basis_set=1, domain='N')
 
+
 # Grid search.
 grid_search(inc=11)