r5020 - /1.3/sample_scripts/diff_tensor_pdb.py -- February 19, 2008 - 11:51

Author: bugman
Date: Tue Feb 19 11:51:00 2008
New Revision: 5020

URL: http://svn.gna.org/viewcvs/relax?rev=5020&view=rev
Log:
Converted the diff_tensor.py sample script to the new relax design.


Modified:
    1.3/sample_scripts/diff_tensor_pdb.py

Modified: 1.3/sample_scripts/diff_tensor_pdb.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/diff_tensor_pdb.py?rev=5020&r1=5019&r2=5020&view=diff
==============================================================================
--- 1.3/sample_scripts/diff_tensor_pdb.py (original)
+++ 1.3/sample_scripts/diff_tensor_pdb.py Tue Feb 19 11:51:00 2008
@@ -1,20 +1,20 @@
 # Script for creating a PDB representation of the Brownian rotational 
diffusion tensor.
 
-# Create the run.
+# Create the data pipe.
 name = 'sims'
-run.create(name, 'mf')
+pipe.create(name, 'mf')
 
 # Read the results.
-results.read(name, dir=None)
+results.read(dir=None)
 
 # Display the diffusion tensor.
-diffusion_tensor.display(name)
+diffusion_tensor.display()
 
 # Create the tensor PDB file.
 tensor_file = 'tensor.pdb'
-structure.create_diff_tensor_pdb(name, file=tensor_file, force=1)
+structure.create_diff_tensor_pdb(file=tensor_file, force=1)
 
 # PyMOL.
-pymol.view(name)
-pymol.cartoon(name)
-pymol.tensor_pdb(name, file=tensor_file)
+pymol.view()
+pymol.cartoon()
+pymol.tensor_pdb(file=tensor_file)