Author: semor
Date: Fri Apr 4 17:11:20 2008
New Revision: 5317
URL: http://svn.gna.org/viewcvs/relax?rev=5317&view=rev
Log:
Changed all instances of 'run.create' to 'pipe.create' as in the new design.
Modified:
1.3/sample_scripts/generate_ri.py
1.3/sample_scripts/grace.py
1.3/sample_scripts/jw_mapping.py
1.3/sample_scripts/latex_mf_table.py
1.3/sample_scripts/map.py
1.3/sample_scripts/mf_multimodel.py
1.3/sample_scripts/model-free.py
1.3/sample_scripts/modsel.py
1.3/sample_scripts/noe.py
1.3/sample_scripts/palmer.py
1.3/sample_scripts/relax_fit.py
1.3/sample_scripts/remap.py
Modified: 1.3/sample_scripts/generate_ri.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/generate_ri.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/generate_ri.py (original)
+++ 1.3/sample_scripts/generate_ri.py Fri Apr 4 17:11:20 2008
@@ -50,7 +50,7 @@
# Create the run
-run.create('test', 'mf')
+pipe.create('test', 'mf')
# Set the nucleus type to nitrogen.
nuclei('N')
Modified: 1.3/sample_scripts/grace.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/grace.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/grace.py (original)
+++ 1.3/sample_scripts/grace.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Create the run.
name = 'm4'
-run.create(name, 'mf')
+pipe.create(name, 'mf')
# Load the data.
results.read(name)
Modified: 1.3/sample_scripts/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/jw_mapping.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/jw_mapping.py (original)
+++ 1.3/sample_scripts/jw_mapping.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Create the run.
name = 'jw'
-run.create(name, 'jw')
+pipe.create(name, 'jw')
# Nuclei type
nuclei('N')
Modified: 1.3/sample_scripts/latex_mf_table.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/latex_mf_table.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/latex_mf_table.py (original)
+++ 1.3/sample_scripts/latex_mf_table.py Fri Apr 4 17:11:20 2008
@@ -25,7 +25,7 @@
# Create the run.
self.run = 'final'
- run.create(self.run, 'mf')
+ pipe.create(self.run, 'mf')
# Load the model-free results.
results.read(self.run, dir=None)
Modified: 1.3/sample_scripts/map.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/map.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/map.py (original)
+++ 1.3/sample_scripts/map.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Set the run name (also the name of a preset model-free model).
name = 'm4'
-run.create(name, 'mf')
+pipe.create(name, 'mf')
# Nuclei type
nuclei('N')
Modified: 1.3/sample_scripts/mf_multimodel.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/mf_multimodel.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/mf_multimodel.py (original)
+++ 1.3/sample_scripts/mf_multimodel.py Fri Apr 4 17:11:20 2008
@@ -10,7 +10,7 @@
# Loop over the runs.
for name in runs:
# Create the run.
- run.create(name, 'mf')
+ pipe.create(name, 'mf')
# Load the sequence.
sequence.read(name, 'noe.500.out')
Modified: 1.3/sample_scripts/model-free.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/model-free.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/model-free.py (original)
+++ 1.3/sample_scripts/model-free.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Create the run.
name = 'm4'
-run.create(name, 'mf')
+pipe.create(name, 'mf')
# Nuclei type
nuclei('N')
Modified: 1.3/sample_scripts/modsel.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/modsel.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/modsel.py (original)
+++ 1.3/sample_scripts/modsel.py Fri Apr 4 17:11:20 2008
@@ -11,7 +11,7 @@
print "\n\n# " + name + " #"
# Create the run.
- run.create(name, 'mf')
+ pipe.create(name, 'mf')
# Reload precalculated results from the file 'm1/results', etc.
results.read(run=name, file='results', dir=name)
@@ -20,7 +20,7 @@
eliminate()
# Model selection.
-run.create('aic', 'mf')
+pipe.create('aic', 'mf')
model_selection('AIC', 'aic')
# Write the results.
Modified: 1.3/sample_scripts/noe.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/noe.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/noe.py (original)
+++ 1.3/sample_scripts/noe.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Create the run
name = 'noe'
-run.create(name, 'noe')
+pipe.create(name, 'noe')
# Load the sequence from a PDB file.
structure.read_pdb(name, 'Ap4Aase_new_3.pdb', load_seq=1)
Modified: 1.3/sample_scripts/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/palmer.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/palmer.py (original)
+++ 1.3/sample_scripts/palmer.py Fri Apr 4 17:11:20 2008
@@ -24,7 +24,7 @@
for name in runs:
# Create the run.
print "\n\n# " + name + " #"
- run.create(name, 'mf')
+ pipe.create(name, 'mf')
# Load the sequence.
sequence.read(name, 'noe.500.out')
@@ -79,7 +79,7 @@
# Create the model selection run.
name = 'aic'
- run.create(name, 'mf')
+ pipe.create(name, 'mf')
# Model selection.
model_selection(method='AIC', modsel_run=name)
Modified: 1.3/sample_scripts/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/relax_fit.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/relax_fit.py (original)
+++ 1.3/sample_scripts/relax_fit.py Fri Apr 4 17:11:20 2008
@@ -2,7 +2,7 @@
# Create the run.
name = 'rx'
-run.create(name, 'relax_fit')
+pipe.create(name, 'relax_fit')
# Load the sequence from a PDB file.
structure.read_pdb(name, 'Ap4Aase_new_3.pdb', load_seq=1)
Modified: 1.3/sample_scripts/remap.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/remap.py?rev=5317&r1=5316&r2=5317&view=diff
==============================================================================
--- 1.3/sample_scripts/remap.py (original)
+++ 1.3/sample_scripts/remap.py Fri Apr 4 17:11:20 2008
@@ -29,7 +29,7 @@
nuclei('N')
# Create the run 'name'.
-run.create(name, 'mf')
+pipe.create(name, 'mf')
# Load the sequence.
sequence.read(name, 'noe.500.out')
r5317 - /1.3/sample_scripts/