r5389 - /1.3/generic_fns/pymol.py -- April 07, 2008 - 18:40

Author: bugman
Date: Mon Apr  7 18:40:38 2008
New Revision: 5389

URL: http://svn.gna.org/viewcvs/relax?rev=5389&view=rev
Log:
Updated the pipe_open() method to the new relax design.


Modified:
    1.3/generic_fns/pymol.py

Modified: 1.3/generic_fns/pymol.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/pymol.py?rev=5389&r1=5388&r2=5389&view=diff
==============================================================================
--- 1.3/generic_fns/pymol.py (original)
+++ 1.3/generic_fns/pymol.py Mon Apr  7 18:40:38 2008
@@ -27,7 +27,7 @@
 # relax module imports.
 from data import Data as relax_data_store
 from relax_errors import RelaxError, RelaxImplementError, RelaxNoPipeError, 
RelaxNoSequenceError
-from relax_io import file_root
+from relax_io import file_root, test_binary
 
 
 class Pymol:
@@ -54,7 +54,7 @@
         """Function for opening a PyMOL pipe."""
 
         # Test that the PyMOL binary exists.
-        self.relax.IO.test_binary('pymol')
+        test_binary('pymol')
 
         # Open the PyMOL pipe.
         self.pymol = popen("pymol -qpK", 'w', 0)
@@ -65,7 +65,7 @@
             return
 
         # Test if the PDB file has been loaded.
-        if hasattr(relax_data_store, 'pdb') and 
relax_data_store.pdb.has_key(self.run):
+        if hasattr(relax_data_store, 'structure'):
             self.open_pdb()